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The map label for this gene is ycgR [H]

Identifier: 153947542

GI number: 153947542

Start: 3542336

End: 3543085

Strand: Reverse

Name: ycgR [H]

Synonym: YpsIP31758_3148

Alternate gene names: 153947542

Gene position: 3543085-3542336 (Counterclockwise)

Preceding gene: 153950361

Following gene: 153947169

Centisome position: 75.01

GC content: 42.8

Gene sequence:

>750_bases
GTGAGCGAAACGTCTAAAGAGCAATTTGTTAAAAAAAATAAACTAGCGATCTGTGCAATTCTTCGGGATTTACAGAAGAA
CGATACTGCCGTGATGGTTACCCATGCTCGAGGACAATTTATTAGCCGTATTCTGGATATACAGCCTGAGACTAATCAGT
TTATTTTCGATTTCGGCAGTGTAGAAAACGAAAATGTTTTGGCTCTTGGTGCGGAGCAACTCACGATTATTGTTGAACCT
ACGGGTGCCAAAATTGAATTCACCTGTAACAAGCTGAAACATGTCGAATATTTGTCACTACCCGCCTTCAGTTCTGCCAT
CCCGGAACAGCTCTATTTCATTCAGAGACGGGAATATTTTCGTGTCAGTATTCCGCAATGGCCAGCTTATTATTGTAGTG
GGAAATTCCCTGACGGCACTCAGTATAAATATACATTGGCCGACATCTCCTTGGGTGGAATGGGTTTATATGCCATGAAA
GGTAGCGAATTTCCGCTCCAGGGATGCAGTGTTCTGCGAGATGCAGCGGTAGATTTATGTGGTTTTGGCCTCTTTAAATT
AGATCTGCAATTTATCCGGGCGCTCGATAAACAAGTGGTTAATAACAAGGGCGAAACGCTGACAGTGCAACGTTTGAGTT
TTAAATTCTTGCGCTTAAGTCCTATTCAAGAGAAAGGCTTACAGCGAGCCATTTTTGAACTGGAAAAACAGCAAACAGCT
AAGGCGAGGAAATTTCAGGAAGGCCTGTAG

Upstream 100 bases:

>100_bases
AGTAATTCTGTTAGTTGCCGATAACCTCTTTGTTATTTATACATTTTTGATGATAATCTGAGCAGATAGACTGATAAATT
AAGAATAGGGAATGGGGACA

Downstream 100 bases:

>100_bases
CCTCACTATATTCTGTAGCTTCACTCTATAGAGTAGCGGTCTGTCGCTTGTATGATGCGTTTTATCATTATTTACAAGCC
CACAGGGAGCGCCTCTGAGG

Product: pilZ family protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR [H]

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSETSKEQFVKKNKLAICAILRDLQKNDTAVMVTHARGQFISRILDIQPETNQFIFDFGSVENENVLALGAEQLTIIVEP
TGAKIEFTCNKLKHVEYLSLPAFSSAIPEQLYFIQRREYFRVSIPQWPAYYCSGKFPDGTQYKYTLADISLGGMGLYAMK
GSEFPLQGCSVLRDAAVDLCGFGLFKLDLQFIRALDKQVVNNKGETLTVQRLSFKFLRLSPIQEKGLQRAIFELEKQQTA
KARKFQEGL

Sequences:

>Translated_249_residues
MSETSKEQFVKKNKLAICAILRDLQKNDTAVMVTHARGQFISRILDIQPETNQFIFDFGSVENENVLALGAEQLTIIVEP
TGAKIEFTCNKLKHVEYLSLPAFSSAIPEQLYFIQRREYFRVSIPQWPAYYCSGKFPDGTQYKYTLADISLGGMGLYAMK
GSEFPLQGCSVLRDAAVDLCGFGLFKLDLQFIRALDKQVVNNKGETLTVQRLSFKFLRLSPIQEKGLQRAIFELEKQQTA
KARKFQEGL
>Mature_248_residues
SETSKEQFVKKNKLAICAILRDLQKNDTAVMVTHARGQFISRILDIQPETNQFIFDFGSVENENVLALGAEQLTIIVEPT
GAKIEFTCNKLKHVEYLSLPAFSSAIPEQLYFIQRREYFRVSIPQWPAYYCSGKFPDGTQYKYTLADISLGGMGLYAMKG
SEFPLQGCSVLRDAAVDLCGFGLFKLDLQFIRALDKQVVNNKGETLTVQRLSFKFLRLSPIQEKGLQRAIFELEKQQTAK
ARKFQEGL

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=241, Percent_Identity=41.0788381742739, Blast_Score=197, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 28243; Mature: 28112

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETSKEQFVKKNKLAICAILRDLQKNDTAVMVTHARGQFISRILDIQPETNQFIFDFGS
CCCCHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCCCCEEEEEECC
VENENVLALGAEQLTIIVEPTGAKIEFTCNKLKHVEYLSLPAFSSAIPEQLYFIQRREYF
CCCCCEEEECCCEEEEEECCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHCCCEE
RVSIPQWPAYYCSGKFPDGTQYKYTLADISLGGMGLYAMKGSEFPLQGCSVLRDAAVDLC
EEECCCCCCEEECCCCCCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHH
GFGLFKLDLQFIRALDKQVVNNKGETLTVQRLSFKFLRLSPIQEKGLQRAIFELEKQQTA
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHEEEEEEECCHHHHHHHHHHHHHHHHHHH
KARKFQEGL
HHHHHHHCC
>Mature Secondary Structure 
SETSKEQFVKKNKLAICAILRDLQKNDTAVMVTHARGQFISRILDIQPETNQFIFDFGS
CCCHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCCCCCEEEEEECC
VENENVLALGAEQLTIIVEPTGAKIEFTCNKLKHVEYLSLPAFSSAIPEQLYFIQRREYF
CCCCCEEEECCCEEEEEECCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHCCCEE
RVSIPQWPAYYCSGKFPDGTQYKYTLADISLGGMGLYAMKGSEFPLQGCSVLRDAAVDLC
EEECCCCCCEEECCCCCCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHH
GFGLFKLDLQFIRALDKQVVNNKGETLTVQRLSFKFLRLSPIQEKGLQRAIFELEKQQTA
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHEEEEEEECCHHHHHHHHHHHHHHHHHHH
KARKFQEGL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA