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The map label for this gene is yhjC [H]

Identifier: 153947540

GI number: 153947540

Start: 643923

End: 644879

Strand: Direct

Name: yhjC [H]

Synonym: YpsIP31758_0547

Alternate gene names: 153947540

Gene position: 643923-644879 (Clockwise)

Preceding gene: 153947497

Following gene: 153950177

Centisome position: 13.63

GC content: 55.28

Gene sequence:

>957_bases
ATGGATAAGTTTTCCGCGATGACCACTTTTGCCAAAGTGGTGGAGACTGGCAGCTTCACCCGAGCGGCAGATGTGTTAGC
GCTGCCCAAGGCGCGGGTATCACAGCGAGTTTCCGATCTTGAGCGTCATCTGGGTGTACGGTTGCTCAATCGCACGACGC
GTAGCTTGAATTTGACCGAGGATGGACAGGCCTATTTCGCCAAGTGTCAGGTCATCCTTCAGGAAATCGACGAATTGGAA
GGGGCGCTCAAGGGGGGCTCGGTAGAACCTCGCGGAAAGTTGCGGGTCGAAGCGCTTGTGTCTGTTGCCCGCTGGGTGAT
CGCTCCGAGCCTGCATGAGTTTCAAGCCCGTTACCCCAATATCTCAGTGCGTTTGGGGGGAAGTGATCGTATCAGCCATC
TGCTGGATAATGGAATCGACTGTGCCATCCGAGGTGGTCATCTGGAAGACTCCAGCCAGATCGCGCGCCACGTCTGTGAC
GTACATTTGGGGCTTTATGCCGCCCCGGCTTACCTCGAAGCTGCTGGTGCGGTGACCCATCCGCAGGAACTAAGCGTTCA
TCGCCGAATCTCGTGGTTTACCGGTCAACGCAATCCTTTTATTTGGTCGCTGCAGTCAGCGTCTGACGCTTTCGAGTTGC
CTGCGGAGGAGGGGTTGCTGTTCGATGATCCGGATGTTGCACTCGCTTCGTGCATGGCTGGAAGCGGAATCTGCCCAGGA
GCCCCTTTCGCTGTGGAAAGCTGGGTACGCGCTGGAGCGTTGGTGCCGGTATTACCGCATTGGCGCTTCAAGGCCCGCCC
AATCCATATTATTTATCCGAGCAATAGGCACCTTTCCGCACGGGTACGCTGTTTTGTGGATTGGTCGCTTGAGATGATGC
AAGCAAATACGAGTATGCGAATAACACCTTGGGAACTGGCTGAACGCATTTTAAAAGGCGACATTTTCAGCCGTTAG

Upstream 100 bases:

>100_bases
GCCTCAGTTTGGTAGTAAAAGAAGTTAATTTTAATTGGTATCGAAAAGTTGATATATATGTAAAATAATGAATCTCTGTT
CAACTTTATTTGACAATTAA

Downstream 100 bases:

>100_bases
CACCGGTGGAGCCCGCCATTACTGGCTTTTGCCGAGCGGTTCAGTTTATTCCCCGAGGGGGTAGGCCTTATCGTGCAAAG
ACCAAGGGTAAAGTTGAACG

Product: LysR family substrate binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELE
GALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCD
VHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERILKGDIFSR

Sequences:

>Translated_318_residues
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELE
GALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCD
VHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERILKGDIFSR
>Mature_318_residues
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELE
GALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCD
VHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERILKGDIFSR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=33.8983050847458, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1786401, Length=283, Percent_Identity=33.5689045936396, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=32.3232323232323, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=27.5261324041812, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=28.3216783216783, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=25.8620689655172, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789440, Length=282, Percent_Identity=27.6595744680851, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=28.2945736434109, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=26.0726072607261, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=25.1724137931034, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=34.453781512605, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=293, Percent_Identity=22.8668941979522, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI145693105, Length=153, Percent_Identity=25.4901960784314, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35236; Mature: 35236

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50931 HTH_LYSR ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTE
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCC
ISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTH
EEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
PQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
HHHHHHHHHEEEECCCCCCEEEEECCCCCCCCCCHHCCCEECCCCHHHHHHHCCCCCCCC
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMR
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCHHHHHCCCCEE
ITPWELAERILKGDIFSR
ECHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTE
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCC
ISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTH
EEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
PQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
HHHHHHHHHEEEECCCCCCEEEEECCCCCCCCCCHHCCCEECCCCHHHHHHHCCCCCCCC
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMR
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCHHHHHCCCCEE
ITPWELAERILKGDIFSR
ECHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]