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The map label for this gene is yfjR [H]

Identifier: 153947503

GI number: 153947503

Start: 917099

End: 917800

Strand: Reverse

Name: yfjR [H]

Synonym: YpsIP31758_0758

Alternate gene names: 153947503

Gene position: 917800-917099 (Counterclockwise)

Preceding gene: 153946878

Following gene: 153947893

Centisome position: 19.43

GC content: 55.56

Gene sequence:

>702_bases
ATGACTCAAGCTGAACGTCGTCATGACCGGCTTGCTGTTCGATTATCGTTGATTATCAGCCGCCTGGTAGCGGGTGAAAC
GCTAAACATGCAAACGCTGGCAACTGAGTTTGGCGTGTCGGTTCGTACTCTGCGCCGGGACTTTCGGGAACGGCTGATGT
ATCTGGATCTAGAGTATCGCAAGGGTCAGTGTCGCTTGTTATCCGGTGGCCGACAGAGAGAACTGGCGGTGATGACGTTT
GCTCGCCAGTCGGGGGTTGAAGCACTGTTTCCTGGTATGGATAACCATCTGGTCGCTTCACTGTTGAGCGGTCCTGGTGA
GTCTCCCTGCCTTATCTGGCAGGGAGTGGCCCAAGTGTCATCCCCAGACTCGGGCATATTCACCCAACTGGTGAGCGCGG
TATCGGAACACCGGAAGGTGACACTACTGGGAAGCGGTTGTCGTTGCACAGACCTTGCTCCCTATCGCCTGGTTCTACGT
GAGGGCGAGTGGTATCTGACGGGTGAGCATCAGGCCCGGATTGCCGTGTTTCCGCTGGCGGATATTCGGGCAGTCACGCT
CCACAACGACAGCTTTGCTCCTGATATCGCCGTACGCAACCTTCTCTCCCGCCCGGATTTTCTTCAGGCTTTACCCCACT
TTCGCCTTTTTTACTCACTGCCTGCCGCCACTGACAGCGGGCTTATACCTCATAAGGAATAA

Upstream 100 bases:

>100_bases
CAGTAAAAAATACGTCTTTCGGTGTCCATTCCCTGTCCCACCCCCTCGTTAAAATAACCGCTTTATTTTCAACTTATTAT
CTCACCGGAGAACCTGTCTC

Downstream 100 bases:

>100_bases
TCACGATGAAATTGTTTACCACTACTGTGTTGGTCGCCAGTCTGTGCCTTGGCACGACTTTCCCCTCTGCCGCTGGAAAT
ATCGTCGGCTCTGTCAAAGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTQAERRHDRLAVRLSLIISRLVAGETLNMQTLATEFGVSVRTLRRDFRERLMYLDLEYRKGQCRLLSGGRQRELAVMTF
ARQSGVEALFPGMDNHLVASLLSGPGESPCLIWQGVAQVSSPDSGIFTQLVSAVSEHRKVTLLGSGCRCTDLAPYRLVLR
EGEWYLTGEHQARIAVFPLADIRAVTLHNDSFAPDIAVRNLLSRPDFLQALPHFRLFYSLPAATDSGLIPHKE

Sequences:

>Translated_233_residues
MTQAERRHDRLAVRLSLIISRLVAGETLNMQTLATEFGVSVRTLRRDFRERLMYLDLEYRKGQCRLLSGGRQRELAVMTF
ARQSGVEALFPGMDNHLVASLLSGPGESPCLIWQGVAQVSSPDSGIFTQLVSAVSEHRKVTLLGSGCRCTDLAPYRLVLR
EGEWYLTGEHQARIAVFPLADIRAVTLHNDSFAPDIAVRNLLSRPDFLQALPHFRLFYSLPAATDSGLIPHKE
>Mature_232_residues
TQAERRHDRLAVRLSLIISRLVAGETLNMQTLATEFGVSVRTLRRDFRERLMYLDLEYRKGQCRLLSGGRQRELAVMTFA
RQSGVEALFPGMDNHLVASLLSGPGESPCLIWQGVAQVSSPDSGIFTQLVSAVSEHRKVTLLGSGCRCTDLAPYRLVLRE
GEWYLTGEHQARIAVFPLADIRAVTLHNDSFAPDIAVRNLLSRPDFLQALPHFRLFYSLPAATDSGLIPHKE

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788988, Length=220, Percent_Identity=53.6363636363636, Blast_Score=216, Evalue=8e-58,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 26044; Mature: 25913

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAERRHDRLAVRLSLIISRLVAGETLNMQTLATEFGVSVRTLRRDFRERLMYLDLEYR
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEEEC
KGQCRLLSGGRQRELAVMTFARQSGVEALFPGMDNHLVASLLSGPGESPCLIWQGVAQVS
CCEEEEECCCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCCCEEEEECHHHCC
SPDSGIFTQLVSAVSEHRKVTLLGSGCRCTDLAPYRLVLREGEWYLTGEHQARIAVFPLA
CCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEECC
DIRAVTLHNDSFAPDIAVRNLLSRPDFLQALPHFRLFYSLPAATDSGLIPHKE
CEEEEEEECCCCCHHHHHHHHHCCCHHHHHCCHHEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TQAERRHDRLAVRLSLIISRLVAGETLNMQTLATEFGVSVRTLRRDFRERLMYLDLEYR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEEEC
KGQCRLLSGGRQRELAVMTFARQSGVEALFPGMDNHLVASLLSGPGESPCLIWQGVAQVS
CCEEEEECCCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCCCEEEEECHHHCC
SPDSGIFTQLVSAVSEHRKVTLLGSGCRCTDLAPYRLVLREGEWYLTGEHQARIAVFPLA
CCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEECC
DIRAVTLHNDSFAPDIAVRNLLSRPDFLQALPHFRLFYSLPAATDSGLIPHKE
CEEEEEEECCCCCHHHHHHHHHCCCHHHHHCCHHEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]