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The map label for this gene is xerC [H]

Identifier: 153947502

GI number: 153947502

Start: 909405

End: 909713

Strand: Direct

Name: xerC [H]

Synonym: YpsIP31758_0743

Alternate gene names: 153947502

Gene position: 909405-909713 (Clockwise)

Preceding gene: 153947068

Following gene: 153949835

Centisome position: 19.25

GC content: 46.6

Gene sequence:

>309_bases
GTGGATCAGTTATTCAACATCAGCCGGATTGACGGGAGAAAAGAGACCGTCACTGAAAATATGGACAGTCCCCCGTTACG
TTCTTTCTTCCGCAGGCTTTCAGTCGAATGCCGTTGTACGATTAGTCCACACCGATTTCGACACACTATCGCCACTGAGA
TGATGAAATCACCGGATCGTAATCTGAAAGTGGTTCAGACCCTGCTAGGGCATTCAAGTATTGCGGTCACGTTGGAATAT
GTTGAGGGCGATATAGACAGCCTCAGATTGGCGTTGGAAGAGACTTTCGAGAGAAAAGAGGTTTTTTAA

Upstream 100 bases:

>100_bases
AGGCCAAGCTCCCAACTGAATTTCCAGCCTTAGCCGCTAAAGCTAAACCACCCACTCAGAAGTATCCATTTTCTTAATTA
AAGGATTAATCAATGATGTA

Downstream 100 bases:

>100_bases
AAAAATCGGCATAACAGAAAGAAAAAACTACCGCTTTCCTTAACAGGATATTGACAGGAGCGCTGAAAAACTGTCAATAT
CCTCCGCCTTAAGACGCAAG

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MDQLFNISRIDGRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
VEGDIDSLRLALEETFERKEVF

Sequences:

>Translated_102_residues
MDQLFNISRIDGRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
VEGDIDSLRLALEETFERKEVF
>Mature_102_residues
MDQLFNISRIDGRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
VEGDIDSLRLALEETFERKEVF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 11888; Mature: 11888

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLFNISRIDGRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDR
CCCCCCCHHCCCCHHHHHCCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCC
NLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKEVF
CHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDQLFNISRIDGRKETVTENMDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDR
CCCCCCCHHCCCCHHHHHCCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCC
NLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKEVF
CHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA