| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is iolC [H]
Identifier: 153947494
GI number: 153947494
Start: 3338854
End: 3340818
Strand: Reverse
Name: iolC [H]
Synonym: YpsIP31758_2969
Alternate gene names: 153947494
Gene position: 3340818-3338854 (Counterclockwise)
Preceding gene: 153947035
Following gene: 153947785
Centisome position: 70.73
GC content: 55.78
Gene sequence:
>1965_bases GTGGAAAAGCAATTTAGCGTTAGCGCGGAAAAGACATGTAATACGGAAAATAAATGTAATACGGAAAAAAAATTTGATGT CATATGCATGGGCCGCATTGCGGTAGATCTCTACGGTCAGCAGATTGGCGCACGGCTAGAGGATGTTGCCAGCTTTGCCA AATATCTCGGCGGTTCATCCGGCAACGTGGCTTATGGTTCCGCCCGGCAGGGGCTGCGCTCGTCAATGTTGGCACGGGTG GGCGACGAGCATATGGGGCGTTTTCTGCGTGAAGAGCTTCATCAGGTTGGCTGTGATACCAGCCATCTGACCACAGATAA AAAGCGGCTCACGGCGCTGGTACTCCTGAGTATTAAAGATCGAGACACCTTTCCGCTGATTTTCTACCGCGATAACTGTG CCGATATGGCGATTACGGCGCAGGATTTCAGCGAGCAATACATCGCCTCTGCCCGCTGCCTTGCCATCACGGGCACCCAT CTTTCTCATCCAAACACTCGTGAAGCGGTACTGACAGCGCTGCGCTATGCACGCCGCAATGGAGTGCGTACCGTGTTGGA TATTGACTACCGCCCGGTACTGTGGGGGCTGACGTCGCTTGGTGACGGCGAAACGCGCTTTATTGAATCCCATCAGGTCA CTGCTGAACTGCTCGCAGTATTCAATTTGTTTGATGTGATTGTGGGGACCGAAGAGGAATTTCATATTGCGGGTGGCAGC ACCAATACGCTGGATGCACTGAGAGGTGTGCGTGAGGTCAGTGACGCTGCGCTGGTGTGCAAGCGGGGGGCGCTGGGTTG TTCGGTGTACACCGAGGCCATCCCGCAGACCCTTGATGAGGGGTTGACCGTTAGCGGTGTGCGGGTAAAAGTGCTGAACG TGTTGGGCGCAGGGGACGCATTTATGTCAGGTCTCCTGCGCGGTTATCTCAATGATGAAGGTTGGCCGCAGGCATGTCGC TACGCCAATGCTTGTGGCGCACTGGTGGTCTCGCGCCACGGCTGTGCGCCTGCGATGCCGAGTAAAATTGAGCTGGATAA TTATCTGGCGCGGGCAGATGCCGTGGTGCGGCCAGATCTTGATGTGCATCTTAACCATTTACACCGCGTTACGACGCGCC GCCGCCAGTGGCCCGAGCTGTGCGTGATGGCCTTTGATCACCGCAGTCAACTCGAAGAAATGGCACTGCAATGCGGCGCT GATCTGTGCCATATCTCGACGCTCAAGACACTAATTTTACAGGCCAGCCGTGAGGCAGTACACACTGCCGGGCTGCAGGG GAAAGCGGGGCTGCTGTGCGATGGCACTTTTGGTCAGGACGCCCTTAATGCCATTACGGGAGCAGGCTGGTGGATTGGGC GGCCCATTGAACTGCCTGGCTCAAGGCCGCTGGCGATGGAGCACGGCAATATTGGCTCACAACTTATTGGTTGGCCGCAA GAGCATATCGTCAAGTGTCTGGTGTTCTTCCATCCAGAAGATGCCTACAGCCTACGCCTGGAGCAGGAACAGAAAATTAT TGAGGTGTACCGGGCGTGTTGCCAATCTGGCCACGAACTGCTGCTGGAAGTGATATTACCCGCTGGCATGCCACGCAGTG ATGAACTCTACCTACGTGCTATTTCACGCTTCTACAATCTCGGGGTCTATCCCGATTGGTGGAAACTGCCGCCACTCGCC TCAGAGGGCTGGGCGGCGCTGAACAAACTGATTGAACGGCGCGATCCGCACTGCCGCGGCGTAGTGATCCTTGGGTTCGA TGCCTCACTTGAGGCACTGCGCACAGGCTTTAATGCCGCGGCGGGCTACCCGATAGTCAAAGGTTTTGCCGTAGGGCGCA CGCTGTTTGGTGACGCTTCCCTCGCTTGGCTAAAGCGCGATATTGACGATACGCAGCTTATTGCCCGCATTCGGGACAAC TATCTACAGCTCATTACGCTGTGGCGTGAGCGCGGGCAGAAATAA
Upstream 100 bases:
>100_bases GTCTCATCAGGATAGCCGCTGGGTGAATGTGACCGACATTGTCTGAGGATGGGGTATGTCTGAGGATGAGGTATGACAGG GTCTGAGGGGGGGTATGAGT
Downstream 100 bases:
>100_bases TCTTCAGGAGAAACATGACGATGGTGGATCAAAGAACGGCGGTTGAACCAAAAACGGCGGTTGATCAGACAACAGAGATA GTTCGAAAAACAGAGACAGT
Product: PfkB family kinase
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase; DKG kinase [H]
Number of amino acids: Translated: 654; Mature: 654
Protein sequence:
>654_residues MEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARV GDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTH LSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGS TNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACR YANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGA DLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQ EHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLA SEGWAALNKLIERRDPHCRGVVILGFDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDN YLQLITLWRERGQK
Sequences:
>Translated_654_residues MEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARV GDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTH LSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGS TNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACR YANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGA DLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQ EHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLA SEGWAALNKLIERRDPHCRGVVILGFDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDN YLQLITLWRERGQK >Mature_654_residues MEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARV GDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTH LSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGS TNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACR YANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGA DLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQ EHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLA SEGWAALNKLIERRDPHCRGVVILGFDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDN YLQLITLWRERGQK
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Escherichia coli, GI1790193, Length=298, Percent_Identity=24.1610738255034, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 72390; Mature: 72390
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSS CCCCCCCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKD CCEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHCCCHHHHEEEEEEEEECC RDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYARRN CCCCEEEEEECCCCCEEEEHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC GVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGS CCEEEEECCCCHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC TNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDA CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEHHHCCCHH FMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDL HHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHCCEECCCC DVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAV HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH HTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQ HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCHHCCCCH EHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRA HHHHHHHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH ISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGFDASLEALRTGFNAA HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCC AGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK CCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSS CCCCCCCCHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKD CCEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHCCCHHHHEEEEEEEEECC RDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYARRN CCCCEEEEEECCCCCEEEEHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC GVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGS CCEEEEECCCCHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC TNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDA CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEHHHCCCHH FMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDL HHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHCCEECCCC DVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAV HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH HTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQ HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCHHCCCCH EHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRA HHHHHHHHEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH ISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGFDASLEALRTGFNAA HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCC AGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK CCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA