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The map label for this gene is ybgD [H]

Identifier: 153947487

GI number: 153947487

Start: 4634430

End: 4634987

Strand: Reverse

Name: ybgD [H]

Synonym: YpsIP31758_4107

Alternate gene names: 153947487

Gene position: 4634987-4634430 (Counterclockwise)

Preceding gene: 153947767

Following gene: 153949755

Centisome position: 98.13

GC content: 46.24

Gene sequence:

>558_bases
ATGTCTAACGTTAAGAAAAGTACTTTGATTATTGCTTTAGCAACTTCATCTGTTATTTATCAGGCTTTCGCTGCTGATGC
AGGGAATGGGCGTATTAAGTTCACAGGAACGGTTATTAATGCACCGTGCTCAATTGCATTAGATTCTACTGATATTAATG
TAGATCTAGGGCAGGTCGCGAATAGGGTTCTGGAGACGGGTAACAAATACTCTCAGAGCGTACGGTATAACATTAATCTG
CAAGATTGTAGCCTGACGGCTCAAGGGAGTGGGGGGGCCACTTATCCTGCACTGTCTAAAGTCAATGTCACCTTCAGCGG
TATTGCTGATGCGGCGGCTCCAGCCCTGCTGGCTAACACCGGTAGCGCGAAAGGCGTGGGTGTTCGCCTTATTGGCACTG
ATGACGCGCTACTCAAAGTGGGTGATACGAGTCCTGATATTAATCTGACATCTGGTCCGAATCAGATTGTATTTTCTGCT
CGTATTGAAGCCACCAGTGCGCCAGTAACTACCGGTACTGTTGTCTCTCAGGCAACCTATGCTCTGAATTATAAATAA

Upstream 100 bases:

>100_bases
GATTTAACCATGGCTGTACTCATTTTTAATAAATTTCTTATGTGATTGGTATTTCAGCGATATATCCTTTAAATGCAATA
TCTACATAAAGGTTTTTAAT

Downstream 100 bases:

>100_bases
CAAATGTTTAAAGTAATTAAAGGGGAGGTAACTCCCCTCTAATTAATATTATCGCCATAAGACAATGGTTTATATATGCC
ATATAATTCTAAAAGAAAAA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MSNVKKSTLIIALATSSVIYQAFAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINL
QDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFSA
RIEATSAPVTTGTVVSQATYALNYK

Sequences:

>Translated_185_residues
MSNVKKSTLIIALATSSVIYQAFAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINL
QDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFSA
RIEATSAPVTTGTVVSQATYALNYK
>Mature_184_residues
SNVKKSTLIIALATSSVIYQAFAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINLQ
DCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFSAR
IEATSAPVTTGTVVSQATYALNYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=190, Percent_Identity=38.9473684210526, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789422, Length=194, Percent_Identity=37.6288659793814, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87081805, Length=184, Percent_Identity=29.3478260869565, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787781, Length=184, Percent_Identity=28.804347826087, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1790773, Length=174, Percent_Identity=31.6091954022989, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87081753, Length=171, Percent_Identity=32.7485380116959, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082421, Length=162, Percent_Identity=27.7777777777778, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18933; Mature: 18802

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVKKSTLIIALATSSVIYQAFAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVA
CCCCCCEEEEEEEECCHHHHHHHHCCCCCCEEEEEEEEECCCEEEEECCCCCEEEHHHHH
NRVLETGNKYSQSVRYNINLQDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANT
HHHHHCCCCCCCEEEEEEEEECCEEEECCCCCCCCCCEEEEEEEEECCCCHHCCEEEECC
GSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFSARIEATSAPVTTGTVVSQATY
CCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCEEECEEE
ALNYK
EEECC
>Mature Secondary Structure 
SNVKKSTLIIALATSSVIYQAFAADAGNGRIKFTGTVINAPCSIALDSTDINVDLGQVA
CCCCCEEEEEEEECCHHHHHHHHCCCCCCEEEEEEEEECCCEEEEECCCCCEEEHHHHH
NRVLETGNKYSQSVRYNINLQDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANT
HHHHHCCCCCCCEEEEEEEEECCEEEECCCCCCCCCCEEEEEEEEECCCCHHCCEEEECC
GSAKGVGVRLIGTDDALLKVGDTSPDINLTSGPNQIVFSARIEATSAPVTTGTVVSQATY
CCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCEEECEEE
ALNYK
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]