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The map label for this gene is ycfD [H]

Identifier: 153947083

GI number: 153947083

Start: 1864959

End: 1866080

Strand: Reverse

Name: ycfD [H]

Synonym: YpsIP31758_1606

Alternate gene names: 153947083

Gene position: 1866080-1864959 (Counterclockwise)

Preceding gene: 153948845

Following gene: 153950223

Centisome position: 39.51

GC content: 47.86

Gene sequence:

>1122_bases
ATGGATTACCAACTCGATCTCGATTGGCCTGACTTTCTACAACGCTATTGGCAAAAGCGCCCTGTTATCCTCAAACGTGG
CTTCAAAAATTTTATTGACCCACTCTCCCCAGATGAACTTGCCGGGTTAGCCATGGAAAATGAAGTCGATAGCCGCTTGG
TAAGCCATGAAAATGGGCGTTGGCATGTTAGCCACGGGCCATTTGAAAGCTTTGATCATTTAGGTGAAAACAACTGGTCA
TTGTTAGTTCAGGCGGTAGACCATTGGCATGAACCCGCAGCGGCGCTAATGCGCCCTTTCCGTTCACTCTCTGACTGGCG
TATGGATGATTTAATGATCTCCTTCTCCGTGCCTGGCGGTGGTGTTGGGCCTCATTTTGATCAATATGATGTTTTTATTA
TTCAGGGTTCAGGTCGTCGCCGCTGGCGGGTGGGCGAAAAAACTGAAATGAAACAACATTGCCCGCACCCAGATTTGCTC
CAAGTGGGGCCTTTCGACGCTATCATTGATGAAGAAATGGAGCCAGGTGATATTCTTTATATTCCACCGGGCTTCCCTCA
TGAAGGCTATTCCCTTGAAAATGCGCTGAATTATTCCGTTGGTTTCCGCGCCCCAAGTGGTCGAGAACTGGTCAGTGGTT
TTGCGGATTATGTATTGGCTCGAGAACTGGGTAGCTATCGTTATAGCGATCCAGATTTACAGCTACGCGAGCATCCAGCC
GAAGTATTACCGTCCGAAGTTGATAAATTGCGCACAATGATGCTGGATCTGGTCCAGCAACCTGAACATTTCCAAAACTG
GTTTGGTGAATTTATTTCCCAATCACGCCATGAGTTGGATATTGCACCGCCGGAGCCGCCTTATCAGACCGGCGATATCT
ATGAACTATTGAAGCAAGGCGATGAATTACAACGCCTTAGTGGATTACGGGTTCTGCGGGTTGGTGATCGTTGCTTTGCT
AATGGTGAGTTGATTGATACGCCACACTTACAGGCCGCCAATGCACTGTGCCAGCATTTTAGCGTGAATGCAGAGATGTT
GGGTGATGCACTTGAAGACCCTTCTTTCCTGGCAATGCTTGCAGCACTGGTCAATAGCGGTTATTGGTATTTTAACGACT
GA

Upstream 100 bases:

>100_bases
ATTGCCACGATGATTAATAATATTTGCCAGTCAGCCCCTGATACTGATGGCGGGTATCCGTTATAATCTCAGGCAATTTC
ACCTTTATCCTGGAATAAAC

Downstream 100 bases:

>100_bases
TCAACGGGTTATGGCAGTACGTGTTTATAACAGTACGTGTTTATAACAGTAACTGTTTATTGCTGCTGACAAACCCCAAT
GACGCGATCTGAAACGGTGA

Product: cupin family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHENGRWHVSHGPFESFDHLGENNWS
LLVQAVDHWHEPAAALMRPFRSLSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRWRVGEKTEMKQHCPHPDLL
QVGPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARELGSYRYSDPDLQLREHPA
EVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQGDELQRLSGLRVLRVGDRCFA
NGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAMLAALVNSGYWYFND

Sequences:

>Translated_373_residues
MDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHENGRWHVSHGPFESFDHLGENNWS
LLVQAVDHWHEPAAALMRPFRSLSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRWRVGEKTEMKQHCPHPDLL
QVGPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARELGSYRYSDPDLQLREHPA
EVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQGDELQRLSGLRVLRVGDRCFA
NGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAMLAALVNSGYWYFND
>Mature_373_residues
MDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHENGRWHVSHGPFESFDHLGENNWS
LLVQAVDHWHEPAAALMRPFRSLSDWRMDDLMISFSVPGGGVGPHFDQYDVFIIQGSGRRRWRVGEKTEMKQHCPHPDLL
QVGPFDAIIDEEMEPGDILYIPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARELGSYRYSDPDLQLREHPA
EVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQGDELQRLSGLRVLRVGDRCFA
NGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAMLAALVNSGYWYFND

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=371, Percent_Identity=78.9757412398922, Blast_Score=621, Evalue=1e-179,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42727; Mature: 42727

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHENGR
CCCEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
WHVSHGPFESFDHLGENNWSLLVQAVDHWHEPAAALMRPFRSLSDWRMDDLMISFSVPGG
EEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
GVGPHFDQYDVFIIQGSGRRRWRVGEKTEMKQHCPHPDLLQVGPFDAIIDEEMEPGDILY
CCCCCCCCEEEEEEECCCCCEECCCCHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEEE
IPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARELGSYRYSDPDLQLREHPA
ECCCCCCCCCCHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCH
EVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQG
HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHCC
DELQRLSGLRVLRVGDRCFANGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAML
CHHHHHCCCEEEEECCHHCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH
AALVNSGYWYFND
HHHHHCCCEEECC
>Mature Secondary Structure
MDYQLDLDWPDFLQRYWQKRPVILKRGFKNFIDPLSPDELAGLAMENEVDSRLVSHENGR
CCCEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
WHVSHGPFESFDHLGENNWSLLVQAVDHWHEPAAALMRPFRSLSDWRMDDLMISFSVPGG
EEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
GVGPHFDQYDVFIIQGSGRRRWRVGEKTEMKQHCPHPDLLQVGPFDAIIDEEMEPGDILY
CCCCCCCCEEEEEEECCCCCEECCCCHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEEE
IPPGFPHEGYSLENALNYSVGFRAPSGRELVSGFADYVLARELGSYRYSDPDLQLREHPA
ECCCCCCCCCCHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCH
EVLPSEVDKLRTMMLDLVQQPEHFQNWFGEFISQSRHELDIAPPEPPYQTGDIYELLKQG
HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHCC
DELQRLSGLRVLRVGDRCFANGELIDTPHLQAANALCQHFSVNAEMLGDALEDPSFLAML
CHHHHHCCCEEEEECCHHCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH
AALVNSGYWYFND
HHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]