| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
Click here to switch to the map view.
The map label for this gene is 153946984
Identifier: 153946984
GI number: 153946984
Start: 2525056
End: 2526948
Strand: Reverse
Name: 153946984
Synonym: YpsIP31758_2206
Alternate gene names: NA
Gene position: 2526948-2525056 (Counterclockwise)
Preceding gene: 153946930
Following gene: 153950136
Centisome position: 53.5
GC content: 46.01
Gene sequence:
>1893_bases GTGCGGGTTTTTTTACGCCTATACAACGAGGTTTCTATGTCTGAGACAATTGATTCTCTCTTGGTTTCCCTTGGCCTGGA AACGGATGCAAAGAGCTTTCAAAAAGCCAATGATGCCGTTAAAGGGATTAAAGACGGCATATTGCAACTGGCCGCCGCAG CCGGTACCGGTATCGGTTTAAAAGCCCTGACTACTGATTTATCTGCCTCAGTATTAGAAATGGACAGGTTGAGTAAGATT ACCAACTTTACCGTCAAGCAGATTGACGGCCTACGTTATGCGATGCGCAGTCTTGGCCTCAGCCCGGATGCGGCTAACCA GATTGTCCAGAAAATCCCTGACTTACAACAACGTGCCACTCAAGGCGAATTAGGGGATAAAGCTTATTGGAATGGCTTAT TTAATCCCGCAGAGTTTGCCCTTAAAACCGGTATGGATTCACTGACGTATTTGATCAATGCATACGAGAAAATGAATAAC GATCAGCGGCGAAATCTACGTAACGGGATTAGTGCCGGTGATAATGATCCGTTTACTCGCTTGTTAGAGGGGGGAATAAA GAAATTTAATACCTCACTAAAAAATTTTGAAGCGTTATACAAACCGCTGGATCCTAAACTTATCGACTCTGCCAATGCAT TCAATAAAGAGATGGCTACTTTGGCAACCAATTTTGAGAATCTGGCACGTTTAATGGGAAGAGACTTATTACCAATAATT AATGCCTTATTAGGGAGTATTAATCAGTTTATTAATGAAAATCCTGAGGTGTCAAAAGCGATTTTGACCGCAGCAGGGGT CGTGGGTACAGCGGGTGCATTAAAGTTTGTTGGAGGAATATTACCTCGTGCGGGAGGAAAACCACCGGTCTCCGTTGCTG GTGAACGAGGATGGACCTCGCGATTGTTGTTTAATCCAGTAACCATCGGGGTGACTGCCGCATTGACGCCCGGCAATATT TTCACCAGTGCTGATGATGCTAAAGCCATGAGCAATCCCGACTCGCTCAAACGTCAGAATTGGGCTAAGAATAATCCTGA TATCCCTTATCTGGACGATACCGATGGCCTTAATCGCCCAGCTAATTATCCAAATGTTCGCCAATATCCAGAGGTATTAG CCAACACGGGAGAAACGGCCAATTATAGCCCGCTATTGTATGATACCCGTGACGACACACAGCAATTAAACCAGTTCACA CCAGCGGCCAACAACCCAAATAGCCCCGAGATTTTTTATCAAAAAGGGAATAACAACCTTAGCCATTTGGTTGACCACAC AAACGTTCGTCAGTATCTGGACATGCTCGCTAAAGCAGAGGGAACGGCTGGTTATGCCAATTCCGGTTATAACACGTTGT TTGGTGGTGACCAATTTTATGATATCAGTGACCACCCTCGAAAATTGATAGAGTTTAAGCAACCTGACGGTACCCCTAAT AAAACTTCTGCTGCAGGGCGGTATCAGTTCACCAGAGACTCTTGGGATGATGCTGCCAAAGCCCTTAATCTGACTGACTT CTCACCACGCAGTCAGGATATTGCTGCATTGTTTCTTATCCAGCGAGCTGGCCAGTTAGAAAATGTCGTAAACGGTAATT TTGCTGATGCAACGGGTGAATTAGGGGGTGTTTGGGCCTCACTGCCATCGTCAAACTATGCACAACCGAAACGTTCTTGG GAAGATATTCAGGGCTACTCTGACCGCCAGATCACCCCAGTGCAACCAATGGCTGCATCGTCTCCACGGGGAGATGTTCG GTTGGAACAATATAATACTATCAGTGTGGGCACTGTGGGTGGCGATGCGGATTCTATTCGTAACGGTATATTACAAGCCA CTACCCAGCTTGCACAGCAGGCGAGGGACCTGATGTATACGGAGCACTACTGA
Upstream 100 bases:
>100_bases TATTGAATAGATTGATTTTGGAATGCGGGCTTTGACAGCGTTTCAATACAGAAAAATAACACATTAATAATTATTCCAGC AGACTCAAGGAACCCGCTAG
Downstream 100 bases:
>100_bases TGGCAATCACCGGATTATTTACCCGTAATCGTCCCCGGATAGGCAATCTCTATTTTGACGCTTTACTGGAAGAGTCCAGT GAGCTACGCACCGATGTCAG
Product: lysozyme
Products: NA
Alternate protein names: Muramidase; Endolysin; Phage Lysozyme; Glycoside Hydrolase Family; Bacteriophage Endolysin Protein; Prophage Endolysin Control Of Lysis; Glycoside Hydrolase Family Protein; Endolysin/Phage Lysozyme; Phage Lysin; Lysozyme-Like; Bacteriophage Endolysin; Autolysin A; Muramidase-Like
Number of amino acids: Translated: 630; Mature: 630
Protein sequence:
>630_residues MRVFLRLYNEVSMSETIDSLLVSLGLETDAKSFQKANDAVKGIKDGILQLAAAAGTGIGLKALTTDLSASVLEMDRLSKI TNFTVKQIDGLRYAMRSLGLSPDAANQIVQKIPDLQQRATQGELGDKAYWNGLFNPAEFALKTGMDSLTYLINAYEKMNN DQRRNLRNGISAGDNDPFTRLLEGGIKKFNTSLKNFEALYKPLDPKLIDSANAFNKEMATLATNFENLARLMGRDLLPII NALLGSINQFINENPEVSKAILTAAGVVGTAGALKFVGGILPRAGGKPPVSVAGERGWTSRLLFNPVTIGVTAALTPGNI FTSADDAKAMSNPDSLKRQNWAKNNPDIPYLDDTDGLNRPANYPNVRQYPEVLANTGETANYSPLLYDTRDDTQQLNQFT PAANNPNSPEIFYQKGNNNLSHLVDHTNVRQYLDMLAKAEGTAGYANSGYNTLFGGDQFYDISDHPRKLIEFKQPDGTPN KTSAAGRYQFTRDSWDDAAKALNLTDFSPRSQDIAALFLIQRAGQLENVVNGNFADATGELGGVWASLPSSNYAQPKRSW EDIQGYSDRQITPVQPMAASSPRGDVRLEQYNTISVGTVGGDADSIRNGILQATTQLAQQARDLMYTEHY
Sequences:
>Translated_630_residues MRVFLRLYNEVSMSETIDSLLVSLGLETDAKSFQKANDAVKGIKDGILQLAAAAGTGIGLKALTTDLSASVLEMDRLSKI TNFTVKQIDGLRYAMRSLGLSPDAANQIVQKIPDLQQRATQGELGDKAYWNGLFNPAEFALKTGMDSLTYLINAYEKMNN DQRRNLRNGISAGDNDPFTRLLEGGIKKFNTSLKNFEALYKPLDPKLIDSANAFNKEMATLATNFENLARLMGRDLLPII NALLGSINQFINENPEVSKAILTAAGVVGTAGALKFVGGILPRAGGKPPVSVAGERGWTSRLLFNPVTIGVTAALTPGNI FTSADDAKAMSNPDSLKRQNWAKNNPDIPYLDDTDGLNRPANYPNVRQYPEVLANTGETANYSPLLYDTRDDTQQLNQFT PAANNPNSPEIFYQKGNNNLSHLVDHTNVRQYLDMLAKAEGTAGYANSGYNTLFGGDQFYDISDHPRKLIEFKQPDGTPN KTSAAGRYQFTRDSWDDAAKALNLTDFSPRSQDIAALFLIQRAGQLENVVNGNFADATGELGGVWASLPSSNYAQPKRSW EDIQGYSDRQITPVQPMAASSPRGDVRLEQYNTISVGTVGGDADSIRNGILQATTQLAQQARDLMYTEHY >Mature_630_residues MRVFLRLYNEVSMSETIDSLLVSLGLETDAKSFQKANDAVKGIKDGILQLAAAAGTGIGLKALTTDLSASVLEMDRLSKI TNFTVKQIDGLRYAMRSLGLSPDAANQIVQKIPDLQQRATQGELGDKAYWNGLFNPAEFALKTGMDSLTYLINAYEKMNN DQRRNLRNGISAGDNDPFTRLLEGGIKKFNTSLKNFEALYKPLDPKLIDSANAFNKEMATLATNFENLARLMGRDLLPII NALLGSINQFINENPEVSKAILTAAGVVGTAGALKFVGGILPRAGGKPPVSVAGERGWTSRLLFNPVTIGVTAALTPGNI FTSADDAKAMSNPDSLKRQNWAKNNPDIPYLDDTDGLNRPANYPNVRQYPEVLANTGETANYSPLLYDTRDDTQQLNQFT PAANNPNSPEIFYQKGNNNLSHLVDHTNVRQYLDMLAKAEGTAGYANSGYNTLFGGDQFYDISDHPRKLIEFKQPDGTPN KTSAAGRYQFTRDSWDDAAKALNLTDFSPRSQDIAALFLIQRAGQLENVVNGNFADATGELGGVWASLPSSNYAQPKRSW EDIQGYSDRQITPVQPMAASSPRGDVRLEQYNTISVGTVGGDADSIRNGILQATTQLAQQARDLMYTEHY
Specific function: Unknown
COG id: COG4678
COG function: function code G; Muramidase (phage lambda lysozyme)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68794; Mature: 68794
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVFLRLYNEVSMSETIDSLLVSLGLETDAKSFQKANDAVKGIKDGILQLAAAAGTGIGL CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH KALTTDLSASVLEMDRLSKITNFTVKQIDGLRYAMRSLGLSPDAANQIVQKIPDLQQRAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHH QGELGDKAYWNGLFNPAEFALKTGMDSLTYLINAYEKMNNDQRRNLRNGISAGDNDPFTR CCCCCCHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHH LLEGGIKKFNTSLKNFEALYKPLDPKLIDSANAFNKEMATLATNFENLARLMGRDLLPII HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHCCHHHHHH NALLGSINQFINENPEVSKAILTAAGVVGTAGALKFVGGILPRAGGKPPVSVAGERGWTS HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH RLLFNPVTIGVTAALTPGNIFTSADDAKAMSNPDSLKRQNWAKNNPDIPYLDDTDGLNRP HHHCCCEEEEEEEEECCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC ANYPNVRQYPEVLANTGETANYSPLLYDTRDDTQQLNQFTPAANNPNSPEIFYQKGNNNL CCCCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCH SHLVDHTNVRQYLDMLAKAEGTAGYANSGYNTLFGGDQFYDISDHPRKLIEFKQPDGTPN HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCC KTSAAGRYQFTRDSWDDAAKALNLTDFSPRSQDIAALFLIQRAGQLENVVNGNFADATGE CCCCCCCCEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LGGVWASLPSSNYAQPKRSWEDIQGYSDRQITPVQPMAASSPRGDVRLEQYNTISVGTVG CCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCC GDADSIRNGILQATTQLAQQARDLMYTEHY CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRVFLRLYNEVSMSETIDSLLVSLGLETDAKSFQKANDAVKGIKDGILQLAAAAGTGIGL CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH KALTTDLSASVLEMDRLSKITNFTVKQIDGLRYAMRSLGLSPDAANQIVQKIPDLQQRAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHH QGELGDKAYWNGLFNPAEFALKTGMDSLTYLINAYEKMNNDQRRNLRNGISAGDNDPFTR CCCCCCHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHH LLEGGIKKFNTSLKNFEALYKPLDPKLIDSANAFNKEMATLATNFENLARLMGRDLLPII HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHCCHHHHHH NALLGSINQFINENPEVSKAILTAAGVVGTAGALKFVGGILPRAGGKPPVSVAGERGWTS HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH RLLFNPVTIGVTAALTPGNIFTSADDAKAMSNPDSLKRQNWAKNNPDIPYLDDTDGLNRP HHHCCCEEEEEEEEECCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC ANYPNVRQYPEVLANTGETANYSPLLYDTRDDTQQLNQFTPAANNPNSPEIFYQKGNNNL CCCCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCH SHLVDHTNVRQYLDMLAKAEGTAGYANSGYNTLFGGDQFYDISDHPRKLIEFKQPDGTPN HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCC KTSAAGRYQFTRDSWDDAAKALNLTDFSPRSQDIAALFLIQRAGQLENVVNGNFADATGE CCCCCCCCEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LGGVWASLPSSNYAQPKRSWEDIQGYSDRQITPVQPMAASSPRGDVRLEQYNTISVGTVG CCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCC GDADSIRNGILQATTQLAQQARDLMYTEHY CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA