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The map label for this gene is rbsR [H]

Identifier: 153946935

GI number: 153946935

Start: 1111667

End: 1112749

Strand: Direct

Name: rbsR [H]

Synonym: YpsIP31758_0927

Alternate gene names: 153946935

Gene position: 1111667-1112749 (Clockwise)

Preceding gene: 153948027

Following gene: 153948654

Centisome position: 23.54

GC content: 47.92

Gene sequence:

>1083_bases
ATGAATGGAAAGCTAAAAATACAAGAAATAGCTAATCAAACGGGTCTTTCGATTAGCACGGTATCAAGAGTGTTAGCGGG
TAAAGGGAATACCAGCGCTAAAGCGAAACAGCAGGTCATGGCGTATGCGCAATCGCAGGGGATCTTGCAGAATTTATCCA
GCGGGCGGTTGATGTTGAATAATATTATGGTGTTTGCTCCCCATCGCGCTTTTGATGTACGAACAGATATTTTTTACTAC
AAAGTCATACAGGGGATCACTCAGGCGGTTAGCCAACATGAAGTGATGATCCGGTACTGCGGGTTATCCGAAACCCACAG
TGATATTTCGCTATTCTTAGATAAAATGACCCACCCACAGAGTGAGGCAGCGATTATTATTGGCATTGATGATCCACGGA
TCCATGCCTTGGCCGCCAGTCTCCATAAGCCAGCGGTATTAATTAATTGTCGCGATAAAGAAATGTCACTGGATAGCGTT
TCTCCTGACCACCAATCAATTGGCGAGTTTTCTGCCCATTACCTGATACAGCAAGGGCATCGCCGTATTCTAACGCTACA
GTGTTTGCGTCGTAATACCATGGAGTTGCGGTTGCTGGGCATTAAAGACGCGTTTGCCAGTAATAATATGCGCTTCGATG
ATCATCAGCACCTGATCACCACTCATGGGTTTGGCGCTGAAGAGGCGGAGCAGGCGATAACCACATTTTTCACAGCCTGT
GAGGATGAAAGCCGGCTGCCGACGGCAATTTTGGTCGGTGGCGACTATATGGCTGTTGGCGCGGTTAACGCGCTGAATAA
ACTCAACGTGAATGTGCCCAACAGGGTGTCAGTCATGAGTATGGACGGCTTTAACTTGGCGGAAATCCATGATGTTCCAC
TGACCGCGGTGCATGTTCCTCGTGATGAACTGGGGGCAGAGGCTATCCAATTGTTACAGCGGCGGGTATTACGCCCGGAT
GCACCGTTTAGCAACTTATTATTGCAAGGTAAGCTGGTGGTTCGCTCCTCGGTAAAGCAGGTCAATCAGAATAGGGCGAT
GCCTGCAGCAAATAAGCCGACGGATCAGATCTATGATTTATAA

Upstream 100 bases:

>100_bases
GGCGGATAATATTTCATCATTTATATTTCTTAGCGCCCTGAACTAGCCATTTTATGGTAATGAAAATTTTTTCATTTGCT
AATTTGAGGGAGATCACAAA

Downstream 100 bases:

>100_bases
GGTTGATTCGATAAACCGGACGGTTTACACAGGGGAGGGCAAGGGCCTGACGGCGGTGATTTCAACACCGGTGTTGGGGA
GTCGAAGAGACGAACCGCAG

Product: LacI family sugar-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MNGKLKIQEIANQTGLSISTVSRVLAGKGNTSAKAKQQVMAYAQSQGILQNLSSGRLMLNNIMVFAPHRAFDVRTDIFYY
KVIQGITQAVSQHEVMIRYCGLSETHSDISLFLDKMTHPQSEAAIIIGIDDPRIHALAASLHKPAVLINCRDKEMSLDSV
SPDHQSIGEFSAHYLIQQGHRRILTLQCLRRNTMELRLLGIKDAFASNNMRFDDHQHLITTHGFGAEEAEQAITTFFTAC
EDESRLPTAILVGGDYMAVGAVNALNKLNVNVPNRVSVMSMDGFNLAEIHDVPLTAVHVPRDELGAEAIQLLQRRVLRPD
APFSNLLLQGKLVVRSSVKQVNQNRAMPAANKPTDQIYDL

Sequences:

>Translated_360_residues
MNGKLKIQEIANQTGLSISTVSRVLAGKGNTSAKAKQQVMAYAQSQGILQNLSSGRLMLNNIMVFAPHRAFDVRTDIFYY
KVIQGITQAVSQHEVMIRYCGLSETHSDISLFLDKMTHPQSEAAIIIGIDDPRIHALAASLHKPAVLINCRDKEMSLDSV
SPDHQSIGEFSAHYLIQQGHRRILTLQCLRRNTMELRLLGIKDAFASNNMRFDDHQHLITTHGFGAEEAEQAITTFFTAC
EDESRLPTAILVGGDYMAVGAVNALNKLNVNVPNRVSVMSMDGFNLAEIHDVPLTAVHVPRDELGAEAIQLLQRRVLRPD
APFSNLLLQGKLVVRSSVKQVNQNRAMPAANKPTDQIYDL
>Mature_360_residues
MNGKLKIQEIANQTGLSISTVSRVLAGKGNTSAKAKQQVMAYAQSQGILQNLSSGRLMLNNIMVFAPHRAFDVRTDIFYY
KVIQGITQAVSQHEVMIRYCGLSETHSDISLFLDKMTHPQSEAAIIIGIDDPRIHALAASLHKPAVLINCRDKEMSLDSV
SPDHQSIGEFSAHYLIQQGHRRILTLQCLRRNTMELRLLGIKDAFASNNMRFDDHQHLITTHGFGAEEAEQAITTFFTAC
EDESRLPTAILVGGDYMAVGAVNALNKLNVNVPNRVSVMSMDGFNLAEIHDVPLTAVHVPRDELGAEAIQLLQRRVLRPD
APFSNLLLQGKLVVRSSVKQVNQNRAMPAANKPTDQIYDL

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=352, Percent_Identity=25, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1790194, Length=336, Percent_Identity=22.9166666666667, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787948, Length=210, Percent_Identity=27.6190476190476, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789068, Length=349, Percent_Identity=25.7879656160458, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39830; Mature: 39830

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKLKIQEIANQTGLSISTVSRVLAGKGNTSAKAKQQVMAYAQSQGILQNLSSGRLMLN
CCCCEEHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
NIMVFAPHRAFDVRTDIFYYKVIQGITQAVSQHEVMIRYCGLSETHSDISLFLDKMTHPQ
EEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCC
SEAAIIIGIDDPRIHALAASLHKPAVLINCRDKEMSLDSVSPDHQSIGEFSAHYLIQQGH
CCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
RRILTLQCLRRNTMELRLLGIKDAFASNNMRFDDHQHLITTHGFGAEEAEQAITTFFTAC
HHEEHHHHHHCCCEEEEEEEEHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHC
EDESRLPTAILVGGDYMAVGAVNALNKLNVNVPNRVSVMSMDGFNLAEIHDVPLTAVHVP
CCCCCCCEEEEECCCEEEHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCEEEEECC
RDELGAEAIQLLQRRVLRPDAPFSNLLLQGKLVVRSSVKQVNQNRAMPAANKPTDQIYDL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MNGKLKIQEIANQTGLSISTVSRVLAGKGNTSAKAKQQVMAYAQSQGILQNLSSGRLMLN
CCCCEEHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
NIMVFAPHRAFDVRTDIFYYKVIQGITQAVSQHEVMIRYCGLSETHSDISLFLDKMTHPQ
EEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCC
SEAAIIIGIDDPRIHALAASLHKPAVLINCRDKEMSLDSVSPDHQSIGEFSAHYLIQQGH
CCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
RRILTLQCLRRNTMELRLLGIKDAFASNNMRFDDHQHLITTHGFGAEEAEQAITTFFTAC
HHEEHHHHHHCCCEEEEEEEEHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHC
EDESRLPTAILVGGDYMAVGAVNALNKLNVNVPNRVSVMSMDGFNLAEIHDVPLTAVHVP
CCCCCCCEEEEECCCEEEHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCEEEEECC
RDELGAEAIQLLQRRVLRPDAPFSNLLLQGKLVVRSSVKQVNQNRAMPAANKPTDQIYDL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]