Click here to switch to the map view.

The map label for this gene is hsdS [C]

Identifier: 153952538

GI number: 153952538

Start: 1683899

End: 1685260

Strand: Direct

Name: hsdS [C]

Synonym: JJD26997_1911

Alternate gene names: 153952538

Gene position: 1683899-1685260 (Clockwise)

Preceding gene: 153951549

Following gene: 153951369

Centisome position: 91.26

GC content: 30.69

Gene sequence:

>1362_bases
ATGACAAATTTACCGCAGGGTTGGGAATGGAAAAGCTTATATGAGATATTATCAAACGATAAATATTCCATAAAAAGAGG
ACCATTTGGAAGTGCCTTAAAAAAAAGTTTTTTTGTGGAAAATGGTGTTAGAGTATTTGAGCAATATAATGCTATAAATA
ATGACCCTCATTGGAAAAGATACTGCATCTCTTATGACAAATTTAAAGAATTAGAAGCATTTAAGGCAATGGAAGGTGAT
TTATTGATTAGCTGTTCTGGAACTTTAGGCAAGATAGTTGAATTACCTAAAAATACGGAAATAGGAGTTATAAATCAGGC
TCTTTTAAAAATAAGACTAGATAATACAAAAATTTTAAATAGTTATTTTATTTATTATTTTAATTCTCCAACAATGCAGG
ATAAAATTTTAGAATCTACTTTGGGGTCAGCAATTAAAAATATAGCTAGTGTGAAAATTTTAAAGCAAATTGAAATTCCG
TTGCCGCCGATAAAAGAGCAAGAAAGGATAGTGGGGATTTTGGATTTTGCTTTTAGTAAGATTGATGAAAATATCAAAAA
AGCAAAAGAAAATTTAGCAAATATTGATGAGCTTATACAAAGTGCTTTGCAAAAGGCTTTTAATCCACTTAACGATAATA
CTAAAGAAAATTATCAACTCCCGCAATCTTGGGAATGGAAAAGCTTGGGTGAAATTTGTGAAATTTTAAGCGGTGGAACT
CCAGATACAAAAAATCCTATTTTTTGGTATTCAAATCAAACAGATGAAACACAATTTGAAAAAAGCGTTGTCGGGGGTTT
GGGGGATTTTAAGGGGGATAAGGGGAGCGACTTTGCAATTAAAGTCCCCTTGTCCCCCTTGGAAAAAAACTATTATTGGG
CAACTCTTGTAGATACAAAAGAAAAATATTTGTATAAAACAAAAAGGAAAATTACACAAAAAGGATTAGATTGTAGTAAT
GCAACTTTATTACCTATAAATTCTGTAATTTTTTCATCTCGTGCATCAATTGGAGAGATAAGTATTGCGAAAGTAGAAAC
CGCAACAAATCAAGGTTATAAGAATTTTATTTGTGATGCAAGTATATTGTATTATGAATTTTTATATTTTGCATTAAAGC
ATTTTACCAAAGAAATAGAATTGCTAGCACAAGGCACAACTTACAAAGAGGTAAGTAAAGCCAAGATAAAAGAATTTAAA
ATCCCCCTACCCCCGCTAAAAGAGCAAAAGCAAATCGCTTCGCATTTAGATGAGCTTTCTTCTCATGTAAAAAATTTAAA
GCAAAACTATCAAGCACAGATAAAAGACTTGCAAGAGCTTAAAAATTCATTACTAGATAAAGCTTTTAAAGGAAATTTAT
AA

Upstream 100 bases:

>100_bases
ATACAGCTAGTGATATAATCAACATATTAAAAAATAATCTTTACGATGATTTTAAAAGACTATATATTAAATTATTTTTA
TGAAGGTTTAGGAAAATAAA

Downstream 100 bases:

>100_bases
ATGTTAAAAATTTTTAGAAATTTTAACACATTAGCTAGATATGTTAAAAATTTTTGATTTTTTTAACATATTCTTTTATA
ATGTTAAAAATTTTTAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: S.MjaXIP; Type I restriction enzyme MjaXIP specificity protein; S protein [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MTNLPQGWEWKSLYEILSNDKYSIKRGPFGSALKKSFFVENGVRVFEQYNAINNDPHWKRYCISYDKFKELEAFKAMEGD
LLISCSGTLGKIVELPKNTEIGVINQALLKIRLDNTKILNSYFIYYFNSPTMQDKILESTLGSAIKNIASVKILKQIEIP
LPPIKEQERIVGILDFAFSKIDENIKKAKENLANIDELIQSALQKAFNPLNDNTKENYQLPQSWEWKSLGEICEILSGGT
PDTKNPIFWYSNQTDETQFEKSVVGGLGDFKGDKGSDFAIKVPLSPLEKNYYWATLVDTKEKYLYKTKRKITQKGLDCSN
ATLLPINSVIFSSRASIGEISIAKVETATNQGYKNFICDASILYYEFLYFALKHFTKEIELLAQGTTYKEVSKAKIKEFK
IPLPPLKEQKQIASHLDELSSHVKNLKQNYQAQIKDLQELKNSLLDKAFKGNL

Sequences:

>Translated_453_residues
MTNLPQGWEWKSLYEILSNDKYSIKRGPFGSALKKSFFVENGVRVFEQYNAINNDPHWKRYCISYDKFKELEAFKAMEGD
LLISCSGTLGKIVELPKNTEIGVINQALLKIRLDNTKILNSYFIYYFNSPTMQDKILESTLGSAIKNIASVKILKQIEIP
LPPIKEQERIVGILDFAFSKIDENIKKAKENLANIDELIQSALQKAFNPLNDNTKENYQLPQSWEWKSLGEICEILSGGT
PDTKNPIFWYSNQTDETQFEKSVVGGLGDFKGDKGSDFAIKVPLSPLEKNYYWATLVDTKEKYLYKTKRKITQKGLDCSN
ATLLPINSVIFSSRASIGEISIAKVETATNQGYKNFICDASILYYEFLYFALKHFTKEIELLAQGTTYKEVSKAKIKEFK
IPLPPLKEQKQIASHLDELSSHVKNLKQNYQAQIKDLQELKNSLLDKAFKGNL
>Mature_452_residues
TNLPQGWEWKSLYEILSNDKYSIKRGPFGSALKKSFFVENGVRVFEQYNAINNDPHWKRYCISYDKFKELEAFKAMEGDL
LISCSGTLGKIVELPKNTEIGVINQALLKIRLDNTKILNSYFIYYFNSPTMQDKILESTLGSAIKNIASVKILKQIEIPL
PPIKEQERIVGILDFAFSKIDENIKKAKENLANIDELIQSALQKAFNPLNDNTKENYQLPQSWEWKSLGEICEILSGGTP
DTKNPIFWYSNQTDETQFEKSVVGGLGDFKGDKGSDFAIKVPLSPLEKNYYWATLVDTKEKYLYKTKRKITQKGLDCSNA
TLLPINSVIFSSRASIGEISIAKVETATNQGYKNFICDASILYYEFLYFALKHFTKEIELLAQGTTYKEVSKAKIKEFKI
PLPPLKEQKQIASHLDELSSHVKNLKQNYQAQIKDLQELKNSLLDKAFKGNL

Specific function: The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type-I restriction system S methylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000055 [H]

Pfam domain/function: PF01420 Methylase_S [H]

EC number: NA

Molecular weight: Translated: 51696; Mature: 51565

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLPQGWEWKSLYEILSNDKYSIKRGPFGSALKKSFFVENGVRVFEQYNAINNDPHWKR
CCCCCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
YCISYDKFKELEAFKAMEGDLLISCSGTLGKIVELPKNTEIGVINQALLKIRLDNTKILN
HHCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCHHHHHHHHEEECCCCEEEE
SYFIYYFNSPTMQDKILESTLGSAIKNIASVKILKQIEIPLPPIKEQERIVGILDFAFSK
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
IDENIKKAKENLANIDELIQSALQKAFNPLNDNTKENYQLPQSWEWKSLGEICEILSGGT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
PDTKNPIFWYSNQTDETQFEKSVVGGLGDFKGDKGSDFAIKVPLSPLEKNYYWATLVDTK
CCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCH
EKYLYKTKRKITQKGLDCSNATLLPINSVIFSSRASIGEISIAKVETATNQGYKNFICDA
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHCCCCCCCEEEEEEEHHHCCCCHHHHHHH
SILYYEFLYFALKHFTKEIELLAQGTTYKEVSKAKIKEFKIPLPPLKEQKQIASHLDELS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
SHVKNLKQNYQAQIKDLQELKNSLLDKAFKGNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNLPQGWEWKSLYEILSNDKYSIKRGPFGSALKKSFFVENGVRVFEQYNAINNDPHWKR
CCCCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
YCISYDKFKELEAFKAMEGDLLISCSGTLGKIVELPKNTEIGVINQALLKIRLDNTKILN
HHCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCHHHHHHHHEEECCCCEEEE
SYFIYYFNSPTMQDKILESTLGSAIKNIASVKILKQIEIPLPPIKEQERIVGILDFAFSK
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
IDENIKKAKENLANIDELIQSALQKAFNPLNDNTKENYQLPQSWEWKSLGEICEILSGGT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
PDTKNPIFWYSNQTDETQFEKSVVGGLGDFKGDKGSDFAIKVPLSPLEKNYYWATLVDTK
CCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCH
EKYLYKTKRKITQKGLDCSNATLLPINSVIFSSRASIGEISIAKVETATNQGYKNFICDA
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHCCCCCCCEEEEEEEHHHCCCCHHHHHHH
SILYYEFLYFALKHFTKEIELLAQGTTYKEVSKAKIKEFKIPLPPLKEQKQIASHLDELS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
SHVKNLKQNYQAQIKDLQELKNSLLDKAFKGNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]