Click here to switch to the map view.

The map label for this gene is hydD [H]

Identifier: 153952404

GI number: 153952404

Start: 409458

End: 409994

Strand: Direct

Name: hydD [H]

Synonym: JJD26997_0462

Alternate gene names: 153952404

Gene position: 409458-409994 (Clockwise)

Preceding gene: 153952637

Following gene: 153952166

Centisome position: 22.19

GC content: 35.01

Gene sequence:

>537_bases
TTGAAATTCTTAGTCCTTGGAATAGGCAATATCATGTTTGCGGATGAAGGCTTAGGCGTTCATCTTTGCAAACAACTTGA
AAAAAACTACAAATTTAGTCATCCTGATTTTACACTGGATTTTATTGATGGTGGAACTTTGGCTTTGCAACTTAGCTATA
TCATCGCTCGGTACGATAGACTTATCGTTTTAGACTGCATAGAAGCAGAAAATGCGAGTATAGGAGATGTATTTTTCTTT
CCTTATGATGCCATGCCTAATAAAATTAGCTGGAGTGGAAGTGCTCATGAAATAGAAATGCTTCAAACTTTACAATACAT
GGAACTTGCAGGAGATTTGCCTAAAACCCACATTTTAGCTTGTGTACCAAAGCGTATTGAAGCGATGAGTTTTAAGCTTT
CAGACGAGCTTATACAAGGAGCTGAAATCATGGAAAAAACTTTACTTAATTTTTTAAGCAAGGAAGGTTTTGTTTATGAA
AAGATTGCGGATTTTTCTTTGCAAGAATTAGCCGATATTTCTTACAAAAATGACTAA

Upstream 100 bases:

>100_bases
CAGTACATATTTACATGGCGATTTTTAACGCAGTAAAAGGTAAAGATGGTGCTATGGATGCTATTATTAGCGGATATAAA
TATGTAAAAGAAGAAAAGCA

Downstream 100 bases:

>100_bases
ATTTTTGTTCTAAAATTCATAGCTTTATTTAAAGAGATTAAATCCACATTTTCTAAATTTACACCACTTGGAATTCCTTG
AGCGATTTTACTAAAAGTTA

Product: hydrogenase maturation protease HydD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFSHPDFTLDFIDGGTLALQLSYIIARYDRLIVLDCIEAENASIGDVFFF
PYDAMPNKISWSGSAHEIEMLQTLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAEIMEKTLLNFLSKEGFVYE
KIADFSLQELADISYKND

Sequences:

>Translated_178_residues
MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFSHPDFTLDFIDGGTLALQLSYIIARYDRLIVLDCIEAENASIGDVFFF
PYDAMPNKISWSGSAHEIEMLQTLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAEIMEKTLLNFLSKEGFVYE
KIADFSLQELADISYKND
>Mature_178_residues
MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFSHPDFTLDFIDGGTLALQLSYIIARYDRLIVLDCIEAENASIGDVFFF
PYDAMPNKISWSGSAHEIEMLQTLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAEIMEKTLLNFLSKEGFVYE
KIADFSLQELADISYKND

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1789367, Length=128, Percent_Identity=29.6875, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 20162; Mature: 20162

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFSHPDFTLDFIDGGTLALQLSYIIARYDR
CEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCC
LIVLDCIEAENASIGDVFFFPYDAMPNKISWSGSAHEIEMLQTLQYMELAGDLPKTHILA
EEEEEEECCCCCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
CVPKRIEAMSFKLSDELIQGAEIMEKTLLNFLSKEGFVYEKIADFSLQELADISYKND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHCCCCCC
>Mature Secondary Structure
MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFSHPDFTLDFIDGGTLALQLSYIIARYDR
CEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCC
LIVLDCIEAENASIGDVFFFPYDAMPNKISWSGSAHEIEMLQTLQYMELAGDLPKTHILA
EEEEEEECCCCCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
CVPKRIEAMSFKLSDELIQGAEIMEKTLLNFLSKEGFVYEKIADFSLQELADISYKND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587288; 9639603; 14500908 [H]