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The map label for this gene is ybeY [C]

Identifier: 153952235

GI number: 153952235

Start: 126166

End: 126573

Strand: Direct

Name: ybeY [C]

Synonym: JJD26997_0128

Alternate gene names: 153952235

Gene position: 126166-126573 (Clockwise)

Preceding gene: 153951244

Following gene: 153951370

Centisome position: 6.84

GC content: 32.35

Gene sequence:

>408_bases
ATGATATTAAGTGATGAAAAATGTGATTTTTTAGAATCTATAGCAAGTTTTTTAGGTCCTAAAGATGTGGAGCTTGTCTT
TGTGGATAGTAAAGAAATGCAAGAAATTAACTTAGAGCAAAGAAAACAAGATAAAACCACTGATGTACTTTCTTTTCCGC
TTGAAAATATTGATGAGAGTTTGCCTTTGGGTTCTGTTGTGATCAATGTGGATTTGGCAAAAGAGAAGGCTAAAGAGTTA
GGGCATAGCTATGAAGAAGAAATAAGCTTGCTTTTTATCCATGCTATGCTTCATTTACTAGGCTTTGATCATGAAAATGA
TAATGGAGAAATGAGAGAAAAAGAGAAAGAACTTATAGAGCATTTTAATTTGCCCAAAAGTTTGATTGTAAGGACTTTAG
AAGGTTAA

Upstream 100 bases:

>100_bases
TTGAAGAGAAAAAACTAAAACAATTTTATAGCAGTAAAAATTGTGCGATTTTTGATGATGAAGAAATAGAAAATTTATAC
CATTTGATTAAGGAAGGTTT

Downstream 100 bases:

>100_bases
ACTAAAATAATAATTTCGGCGTCCAAATCATAGAAATTGGCTCTAAAAAGAAGGATTAGAATAATTAAGATAAAAAGTTT
AGCTCTCTAATCAAAAATAA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MILSDEKCDFLESIASFLGPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKEL
GHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIEHFNLPKSLIVRTLEG

Sequences:

>Translated_135_residues
MILSDEKCDFLESIASFLGPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKEL
GHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIEHFNLPKSLIVRTLEG
>Mature_135_residues
MILSDEKCDFLESIASFLGPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKEL
GHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIEHFNLPKSLIVRTLEG

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=94, Percent_Identity=38.2978723404255, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 15470; Mature: 15470

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSDEKCDFLESIASFLGPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDES
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHCCHHHHHCCHHHHHHHCCHHHHHCC
LPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIE
CCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
HFNLPKSLIVRTLEG
HCCCCHHHHHHHCCC
>Mature Secondary Structure
MILSDEKCDFLESIASFLGPKDVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDES
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHCCHHHHHCCHHHHHHHCCHHHHHCC
LPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDNGEMREKEKELIE
CCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
HFNLPKSLIVRTLEG
HCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]