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The map label for this gene is exbD [H]

Identifier: 153952038

GI number: 153952038

Start: 1752417

End: 1752827

Strand: Direct

Name: exbD [H]

Synonym: JJD26997_1988

Alternate gene names: 153952038

Gene position: 1752417-1752827 (Clockwise)

Preceding gene: 153952311

Following gene: 153951306

Centisome position: 94.98

GC content: 24.57

Gene sequence:

>411_bases
ATGCTTATAAGGCACATAAAAATGCTTAAACTACCAAAAAATGAAGGTTTAAATATAGTTCCATTTATAGACATTATGCT
TGTTTTGCTTGCTATAGTGCTTAGTATTTCAACCTTTATTGCACATGGAAAAATTCAAATCTCACTTCCTTCAAGTGAAA
ATGCTACCAATATAAGCAATAATGAAAAAAAACTTCTTATAACCATAGACGAAAAAAATACTTTTTATTTAAATGATAAA
TTAGCTGATTTAAATGAAGTTCAAAATGCTATTTTTTCACTTGATAAAAAAACTATAGTAGAATTAAAAAGCGACAAAAA
TGCTAAATTTGAAAGCTTTGTAAAAATTATAGATTTTTTAAAAGCCAAAGAACATGAAAATTTTCAGATTATTACTGAGA
AAAACAAATGA

Upstream 100 bases:

>100_bases
CTTTCTTTGGCTCTTAAAGCTACAGCTTTGGGGCTTTTAGTTGCTATTCCTGCTTTAATGGCTTATAATGCCTTACTTAG
AAAAATTTCTCTCTTAAGCA

Downstream 100 bases:

>100_bases
AAACTTTATTTTTAAATCATAAATACCAAGCTTCTTATATAACTTTTATAGTCTTTATACCTTTGCTTTTTATCATTTTT
CGTTCAAATGACTTTTTTAA

Product: biopolymer transport exbD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MLIRHIKMLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPSSENATNISNNEKKLLITIDEKNTFYLNDK
LADLNEVQNAIFSLDKKTIVELKSDKNAKFESFVKIIDFLKAKEHENFQIITEKNK

Sequences:

>Translated_136_residues
MLIRHIKMLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPSSENATNISNNEKKLLITIDEKNTFYLNDK
LADLNEVQNAIFSLDKKTIVELKSDKNAKFESFVKIIDFLKAKEHENFQIITEKNK
>Mature_136_residues
MLIRHIKMLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPSSENATNISNNEKKLLITIDEKNTFYLNDK
LADLNEVQNAIFSLDKKTIVELKSDKNAKFESFVKIIDFLKAKEHENFQIITEKNK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014171 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15554; Mature: 15554

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRHIKMLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPSSENATNISN
CCCCHHHEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
NEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAKFESFVKIIDFL
CCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHH
KAKEHENFQIITEKNK
HCCCCCCEEEEEECCC
>Mature Secondary Structure
MLIRHIKMLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPSSENATNISN
CCCCHHHEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
NEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAKFESFVKIIDFL
CCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHH
KAKEHENFQIITEKNK
HCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]