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The map label for this gene is slyD [H]

Identifier: 153951916

GI number: 153951916

Start: 122119

End: 122673

Strand: Direct

Name: slyD [H]

Synonym: JJD26997_0122

Alternate gene names: 153951916

Gene position: 122119-122673 (Clockwise)

Preceding gene: 153950982

Following gene: 153952364

Centisome position: 6.62

GC content: 38.2

Gene sequence:

>555_bases
ATGACTATAGAAAAAAATAGTGTAGTTTCAATGTTTTATGAGTTAAAAGATGCAAATACAAATGAAGTTTTAGAATCAAA
TTTATATTCTCAACCTATTTCTTTTATTTTAGGCAAAGGTCAGATTTTAGAAAGCTTAGAAGAAGAAGTGATGAAGCTTG
ATTGCCCTAGCAATGCCGATGTGGTAATTAAAAAAGAAAAAGGTTTAGGCGAATACGATGAAAATGCGGTTCAAACTTTG
CCAAAAGAGCAATTTGCAGGTATTGATTTAAAAGTAGGCATGGAGCTTTTTGGCGAAGGTGAAAATGGCGAAACCGTTCG
TGTAACTGTAAAAGAAATCGGTGAAAATGATGTGACAATTGATTATAATCACCCTTATGCGGGTCGCGATTTGCTTTTTT
CTTTAAATATTATAGATGCTAGAGCTGCGAGTGAAGACGAAATTCTTACAGGTATTATCGCAGGAAGTCATAGTTGTGGT
TGTGGAAGCGGACATGGACACGGCGGTGGCGGTTGCTGTGGCGGTGGCGGTGGCGGTGGTTGCGGTTGTCATTAA

Upstream 100 bases:

>100_bases
CAAAAACAGCAAATGGTTTTTATAAAGCTTTAAAAATTAATTATCCAAATTCACCCGAAGCAAAAGCTTCACCCAATAGA
AAATAAATTAAGGAGATAAA

Downstream 100 bases:

>100_bases
TGAATGTTACGTTTATATTTCCAGGTCAAGGCTCGCAAAGTCTTGGCATGGGAAAAGATTTTTATGAAAACTCTATAAAA
GCTAAAGAATTCCTTCAAAA

Product: FKBP-type peptidyl-prolyl cis-trans isomerase SlyD

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILESLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTL
PKEQFAGIDLKVGMELFGEGENGETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIIDARAASEDEILTGIIAGSHSCG
CGSGHGHGGGGCCGGGGGGGCGCH

Sequences:

>Translated_184_residues
MTIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILESLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTL
PKEQFAGIDLKVGMELFGEGENGETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIIDARAASEDEILTGIIAGSHSCG
CGSGHGHGGGGCCGGGGGGGCGCH
>Mature_183_residues
TIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILESLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLP
KEQFAGIDLKVGMELFGEGENGETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIIDARAASEDEILTGIIAGSHSCGC
GSGHGHGGGGCCGGGGGGGCGCH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=149, Percent_Identity=32.8859060402685, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 19433; Mature: 19302

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILESLEEEVMKLDCPSNAD
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCC
VVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGENGETVRVTVKEIGENDVTI
EEEEECCCCCCCCCHHHHHCCHHHHCCCEEEECHHEECCCCCCCEEEEEHHHCCCCCEEE
DYNHPYAGRDLLFSLNIIDARAASEDEILTGIIAGSHSCGCGSGHGHGGGGCCGGGGGGG
EECCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
CGCH
CCCC
>Mature Secondary Structure 
TIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILESLEEEVMKLDCPSNAD
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCC
VVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGENGETVRVTVKEIGENDVTI
EEEEECCCCCCCCCHHHHHCCHHHHCCCEEEECHHEECCCCCCCEEEEEHHHCCCCCEEE
DYNHPYAGRDLLFSLNIIDARAASEDEILTGIIAGSHSCGCGSGHGHGGGGCCGGGGGGG
EECCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
CGCH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]