Click here to switch to the map view.

The map label for this gene is 153951804

Identifier: 153951804

GI number: 153951804

Start: 711894

End: 712412

Strand: Direct

Name: 153951804

Synonym: JJD26997_0786

Alternate gene names: NA

Gene position: 711894-712412 (Clockwise)

Preceding gene: 153952493

Following gene: 153951096

Centisome position: 38.58

GC content: 27.17

Gene sequence:

>519_bases
TTGCTTACAATTTTTTTAATTTTGTTAAATATTTTATGTTATTTTTTGATTTCTTATGATTATTACAATATCCTTGGTTT
GAATATTTTATTTTTTAATGGAGCTTATTGGCAGCTTTTAAGCTCAATGTTTTTACATGGAAATTTAATCCATCTCATAT
TAAATATGATAGTTTTGTTTCAATTTGGGCGTATATTAGAAACTTATTTGGGTGCTTTGCGTTTTATTTTTATTTATTTT
ATTGGCGGGTTGTTATGTTCGCTTTTAAGTGTTTTTTATGTGTATTTTGATTTTAAATATTTTGGAGAAAATATAAATGT
CATAGGTGCTAGTGGTGCAATTTGTGTTTTAATGGGCTTTTATGCTGTTCTTGATAAAAATAGCACAAAAGGACTTATAG
TGGCAATTTTACTTATGAGTTTTGCGCCATTGCTTATGGGGGTAAATGTTGCTTGGTATGGTCATATTTTCGGGTTTATG
TGTGGTTATATTTTAGCTAAAATAAAAGAGGTAAAATGA

Upstream 100 bases:

>100_bases
CAATATTTTTCCTAATTATTTTTTAGTAAAATTGTAAAGAATTTATGTGAATTTTATGTGAATTTTAAGACAATATTATA
AAAAATAAAGGTTTTATACT

Downstream 100 bases:

>100_bases
AAAAAATTTATATTATAAGACATGCAAAAGCAAGCAAGAGTGGAGATATCGATGATTTTGAAAGAAAACTTACTAAGAGT
GGAAAGAAAGATTTAAAAAA

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Peptidase E; Peptidase; Rhomboid Family Membrane Protein

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLTIFLILLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLIHLILNMIVLFQFGRILETYLGALRFIFIYF
IGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLDKNSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFM
CGYILAKIKEVK

Sequences:

>Translated_172_residues
MLTIFLILLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLIHLILNMIVLFQFGRILETYLGALRFIFIYF
IGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLDKNSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFM
CGYILAKIKEVK
>Mature_172_residues
MLTIFLILLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLIHLILNMIVLFQFGRILETYLGALRFIFIYF
IGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLDKNSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFM
CGYILAKIKEVK

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19640; Mature: 19640

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIFLILLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLIHLILNMIVLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
QFGRILETYLGALRFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
YAVLDKNSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFMCGYILAKIKEVK
HHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTIFLILLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMFLHGNLIHLILNMIVLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
QFGRILETYLGALRFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
YAVLDKNSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFMCGYILAKIKEVK
HHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA