| Definition | Campylobacter jejuni subsp. doylei 269.97, complete genome. |
|---|---|
| Accession | NC_009707 |
| Length | 1,845,106 |
Click here to switch to the map view.
The map label for this gene is yhdJ [C]
Identifier: 153951716
GI number: 153951716
Start: 1477665
End: 1480127
Strand: Direct
Name: yhdJ [C]
Synonym: JJD26997_1679
Alternate gene names: 153951716
Gene position: 1477665-1480127 (Clockwise)
Preceding gene: 153951160
Following gene: 153951717
Centisome position: 80.09
GC content: 25.86
Gene sequence:
>2463_bases ATGGATTATAAAAAAGCATTTTATTCAAAGTTAGAGGATTGTTATTTGGGTGTGAAAATCAAAAATTCACAAAATCAAGC AAAAAATGGTTTTACAAATTTACTTGCTATAAAAGAAAAATATTTTCAAAAAATCAAAGACTATTTAGATACACAAAAGC TTTATACAGATACTTATAATAAGCTTTATAATTTTTTTAGCACTTATTTAAACGAAACAGGAACGCCGTTTTTTTACGAT ACACCTATGTATAAAAATATCTATGCAAGGGTATATTCAAACTCAAAAGACACAAGTCTTTTTTATAAAACACAAAATTT ATACTATGTAAAATCAGATACTATTTATAATCCTTTAAGCTTGCAAAGTGAAGATAAAAAATATACTTTAAATTTTCTTA CCGATGAGTATGAGCAAAATGCTGATAATAATAAAAGTAAAATCAATTTTTATTTGCAAAATATACAAGATGATAATATA AACATAAAAGTGATAAATTCTAAAAATCATGATGGCACAAATGTATTTAAACAAAACCCAAGTGAATTTAGCGATGTTTT TTTAAAGACTTTAAAAAATGCACAAATAAACATAAAAGAAGAAGAGCTAAAAAAGCTTTTTAAAACTTATAAAAAACAAA ATGAAGTAGATTTTTTCATCCATAAAAATGCGAAAGAATTTTTAAAAGAACAATTTGATTTGTGGTTGTTTTCTTATGTG AATGATAGCATTACTGATTGGACTAAAGAAAAGATAGATGAGATTAACACTCTAAAACAGATCGCTTTTGCTATCATCGA CTTGATAGCTGACTTTGAAAATGAGTTAAAAGCCATATGGCTAAAGCCAAAATTTGCTAAAAACACTCACTATGTCTTTA GTATAGACACTATAAAAACTTATGCAAATAATGCTGATGAAATTTTAAAATCCATCTACAAAGATGTAAAATTTAATGAG CAAATTACAGAATGGAAAGAATTAAATTTCATAAATGATGAATTTGATATAAAGTTTATAAACGATGAAAAATACAAATT CTTACCGCTTGATACAAAGTATTTAAGTGAGGAAAATTATTTTAAACTTTTAGAAAGTTTTGAAAATTTAGATGAAATTT TAAACGGAGAGCTTGTAAAAGCAGATAATTTTCAAGCGCTTAATTCTCTAATGCCAAAATATCAAGGTAAAATAGATCTA ATCTACATAGATCCGCCATTTAACACAGGAAGCGACTTTGACTACAAAGATAAATTTCAAGATAGCACTTGGCTTTCTTT AATGCACAATCGCTTGGAACTAGCAAAAGAATTTTTAAGCGATAAAGGAAGTTTTTATTTGCATTTAGATGAAAATGCTG ATTATTTTGGGAGAATTTTACTGAACGAATTTTTTGGAGAAATGGAGTGTAAAAAAATTACATTTGATACAAATGCTACC AAAGATGAAGAAGCTGATTTATTTGGATATAAAAGCTTTGGTAATAATTTTGTTTTAAAAAGCTCAACTATTCTTTTTTT GAAAAAAACAAATAGCATTTTCAATAAACTGTGGAAGCCAAATAGAAATTCTTCTTTGTTAAATTTGGGGCAGCTTGATT TAATAGGAATTTCTACAATTGAAACACCTAAGAAAATAACAGATTATGAATATTATGTTCAAATATGGAAAAATGGTAAA TTATGTCATGAAAAGATTGATATTAAAGATGAAAAAATATATCCATTGGGTGATATTTGGAATGATTTGTATTCTTTTAC TCAATCTGAAATGAGAGTTAGTGAAAATATATCTTTTTATAGCTCACAAAAACCGGAAAATATGTTAAGAAGAATAATAC AGTCTAGTTCTGACGAAAATAGTGTTGTAATGGATTTTTTTGTAGGTAGTGGAACTACTTTGGTGGTATCTCATAAATTA AATAGAAAGTATTTGGGTGTGGAAATGGGAGAACATTTTTATGAAAAATATTTGACATTTAATAAAGATACTAAACAATA CGAATATAGACTAGGTTTGCTTGGAAGAATGAAGAATGTTATAGCTGGCGATATTGAATTTTGCGCTATAGATAAAAAAA GAAGATCATCTCTTTCTAAAATGATAAATTTTAAAGGTGGTGGCGCTTTTAGATATTATGAACTTGAAAGCTATGAAGAA AGTTTAGAAAATTGTGAGTATAAACTTGATGAAAACTCACTCATAGATTATAGAAAATCACGCAAATTCATAAAAGCACT CAAAAAAGGCGAAAATATATGCCTTGATATGAATGCTTATGATAAAGAATTTGATATTTTTTTAACGATGTCTAATCTTT TAGGACTTAAAATCAAAAATATTTTTATAGATGAAAATGGCATAAAATCTTGTAAATTTGAAAATAATGAGATTATAAAT TTAGAAAATATAGACTTAATTAAATATCCAAAACTAAAAAATCTAATTTGGTGGGAAAAGTGA
Upstream 100 bases:
>100_bases GCTCACATGAGTTTAGTGCCATGGGTTTTATAGAAGTTTTACCTTTGATTTTTAAGTCAAAAAAAGATATTATTTTAACT TATAAATTTAAAGGCAAAGT
Downstream 100 bases:
>100_bases TGAGTGGGACCGGTTTAATATTTACTGAATGTGAATTAATTATAAATCAGAATAGATATCCAAAACTTAGTGATTTTGAT AATAAACAAAGATATATATA
Product: adenine-specific DNA methylase
Products: NA
Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYNKLYNFFSTYLNETGTPFFYD TPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLSLQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNI NIKVINSKNHDGTNVFKQNPSEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKTYANNADEILKSIYKDVKFNE QITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDL IYIDPPFNTGSDFDYKDKFQDSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGK LCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKL NRKYLGVEMGEHFYEKYLTFNKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKNIFIDENGIKSCKFENNEIIN LENIDLIKYPKLKNLIWWEK
Sequences:
>Translated_820_residues MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYNKLYNFFSTYLNETGTPFFYD TPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLSLQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNI NIKVINSKNHDGTNVFKQNPSEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKTYANNADEILKSIYKDVKFNE QITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDL IYIDPPFNTGSDFDYKDKFQDSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGK LCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKL NRKYLGVEMGEHFYEKYLTFNKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKNIFIDENGIKSCKFENNEIIN LENIDLIKYPKLKNLIWWEK >Mature_820_residues MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYNKLYNFFSTYLNETGTPFFYD TPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLSLQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNI NIKVINSKNHDGTNVFKQNPSEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKTYANNADEILKSIYKDVKFNE QITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENYFKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDL IYIDPPFNTGSDFDYKDKFQDSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTIETPKKITDYEYYVQIWKNGK LCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFYSSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKL NRKYLGVEMGEHFYEKYLTFNKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKNIFIDENGIKSCKFENNEIIN LENIDLIKYPKLKNLIWWEK
Specific function: Unknown
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 97157; Mature: 97157
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYN CCHHHHHHHHHHHHEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLYNFFSTYLNETGTPFFYDTPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLS HHHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCEECCCC LQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNINIKVINSKNHDGTNVFKQNP CCCCCCEEEEEEHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC SEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV HHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEHHHHH YANNADEILKSIYKDVKFNEQITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENY HCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCHHHCCCCHH FKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFDYKDKFQ HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHCC DSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCC KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTI CCCCCCEEEECCCCCCEEEECCEEEEEECCHHHHHHHCCCCCCCCEEECCCEEEEEEECC ETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFY CCCCHHCCCEEEEEEECCCCEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC SSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKLNRKYLGVEMGEHFYEKYLTF CCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCEEECHHHHHHHHHHHHHC NKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE CCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEHHHHHH SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKN HHHCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECHHCCEEEEE IFIDENGIKSCKFENNEIINLENIDLIKYPKLKNLIWWEK EEEECCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCC >Mature Secondary Structure MDYKKAFYSKLEDCYLGVKIKNSQNQAKNGFTNLLAIKEKYFQKIKDYLDTQKLYTDTYN CCHHHHHHHHHHHHEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLYNFFSTYLNETGTPFFYDTPMYKNIYARVYSNSKDTSLFYKTQNLYYVKSDTIYNPLS HHHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCEECCCC LQSEDKKYTLNFLTDEYEQNADNNKSKINFYLQNIQDDNINIKVINSKNHDGTNVFKQNP CCCCCCEEEEEEHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC SEFSDVFLKTLKNAQINIKEEELKKLFKTYKKQNEVDFFIHKNAKEFLKEQFDLWLFSYV HHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH NDSITDWTKEKIDEINTLKQIAFAIIDLIADFENELKAIWLKPKFAKNTHYVFSIDTIKT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEHHHHH YANNADEILKSIYKDVKFNEQITEWKELNFINDEFDIKFINDEKYKFLPLDTKYLSEENY HCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCHHHCCCCHH FKLLESFENLDEILNGELVKADNFQALNSLMPKYQGKIDLIYIDPPFNTGSDFDYKDKFQ HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHCC DSTWLSLMHNRLELAKEFLSDKGSFYLHLDENADYFGRILLNEFFGEMECKKITFDTNAT CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCC KDEEADLFGYKSFGNNFVLKSSTILFLKKTNSIFNKLWKPNRNSSLLNLGQLDLIGISTI CCCCCCEEEECCCCCCEEEECCEEEEEECCHHHHHHHCCCCCCCCEEECCCEEEEEEECC ETPKKITDYEYYVQIWKNGKLCHEKIDIKDEKIYPLGDIWNDLYSFTQSEMRVSENISFY CCCCHHCCCEEEEEEECCCCEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC SSQKPENMLRRIIQSSSDENSVVMDFFVGSGTTLVVSHKLNRKYLGVEMGEHFYEKYLTF CCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCEEECHHHHHHHHHHHHHC NKDTKQYEYRLGLLGRMKNVIAGDIEFCAIDKKRRSSLSKMINFKGGGAFRYYELESYEE CCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEHHHHHH SLENCEYKLDENSLIDYRKSRKFIKALKKGENICLDMNAYDKEFDIFLTMSNLLGLKIKN HHHCCCEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECHHCCEEEEE IFIDENGIKSCKFENNEIINLENIDLIKYPKLKNLIWWEK EEEECCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]