Click here to switch to the map view.

The map label for this gene is rbfA [H]

Identifier: 153951532

GI number: 153951532

Start: 145689

End: 146051

Strand: Direct

Name: rbfA [H]

Synonym: JJD26997_0150

Alternate gene names: 153951532

Gene position: 145689-146051 (Clockwise)

Preceding gene: 153951208

Following gene: 153952308

Centisome position: 7.9

GC content: 30.3

Gene sequence:

>363_bases
ATGAACCCAAGTGAGATTAAAAAACTACGTACTGAAAGCATTTTAAAAGAGCTGATCCCTGAAGCTTTAGCAAATTTAGA
TGATGAAAATTTGAAAAATTTGTGTGTAGTGGATGTAGAGTGCAAAAAAGGCAGATATGATGCTTTTGTGTATCTTGATA
AAATGTTTTTTAATATTCATGAGCAAGAAAAAATTTTATCTTCTTTAAAAAAGGCAAGTAGAGCTTTGCAAAATTATTGC
ATGAGTGAGCAGGGTTGGTATAGGTGTCCGAATTTTCACTTTAAATTTGATGATAGACTTGAGTATCAAAACCATATGGA
CGCACTTTTTGAAAAAATAAAAAAGGATAAAAATGAATCTTGA

Upstream 100 bases:

>100_bases
CAAAAGGTTATGAATGTGGCGTAGGCATAGAAGGGTGTGATGATATGAGAGTGGGTGATTATATAGAAAGCTATAAAGAA
GTAGAGGAACAAGCAAGTCT

Downstream 100 bases:

>100_bases
AGCCCTTTGCAAAGAAGCAGAACTTAGCTTTTATGATGATGAGCTAGTAAGTGAAAATGGTAAAAAAATTTATAGAATTT
ATGTGCAAAAAGAAGGCGGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNIHEQEKILSSLKKASRALQNYC
MSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES

Sequences:

>Translated_120_residues
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNIHEQEKILSSLKKASRALQNYC
MSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES
>Mature_120_residues
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNIHEQEKILSSLKKASRALQNYC
MSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14317; Mature: 14317

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNIH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
EQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES
HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNIH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
EQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES
HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA