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The map label for this gene is ydcM [C]

Identifier: 153951213

GI number: 153951213

Start: 233470

End: 234711

Strand: Direct

Name: ydcM [C]

Synonym: JJD26997_0256

Alternate gene names: 153951213

Gene position: 233470-234711 (Clockwise)

Preceding gene: 153951627

Following gene: 153951983

Centisome position: 12.65

GC content: 29.31

Gene sequence:

>1242_bases
TTGCTTAGTGCAGTAAAATATAGAATTTATCCTACTAAAGCTCAAAAAGAACTCATCCATAAACACTTTGGTTGTGCTAG
AGTAGTTTATAATCATTTCTTAGATTATCGTCAAAAACAATTTGCTAAAGGCATAAAAGAAACATACTTTACTATGCAAA
AAGAGCTTACTCTTCTAAAAAAGCAAGATGAATATAAATATCTTAATGAGTGTGCTTCGCAATCTTTACAGATGGCTCTT
AGACAATTAGTTACTGCCTTGGATAATTTCTTTGCTAAAAGAGCAAAATACCCCAATTTCAAGTCAAAGAAAAATGCAAG
GCAAAGTTATGCTATTCCACAGAATATTAAGCTAGATAATAAAAAAGTTTATGCTTCTAAATTTACAGAAGGTATAAAAA
CTAAAATCCATAGAAAGCTTGATAAGGATTGTATAATAAAACAAGCCTTTATTTCTAAAATAGCCGATGAATACTACATT
GCAATTAGCTATGAAAACAATAAATCTTTACCTAAGCCAAAAGTAATAGAAAATGCTGTTGGTTTAGATATGGGTTTGGA
AAATCTTATTATTAGAAGTGATTGCGTAATTTATAAAAATCACAAATTCTTACAAGATAAAGAAAATAAACTCATAAAAC
TTCAAAAACAACTTAGTAAAAAACAAAAAGGTTCAAATAATTATGCAAAGACTAAGCTAAAAGTAGCTAAAGCTCATCAA
AAAATTACAAGAGCAAGAGATGATTATTTACATAAGATAAGCGATGAAATCACAAATTTATATGATTTTATAGCTGTTGA
AAATCTAAATATCAAAGGACTAATCAAAAACAAACATTTATCTAAATCTATTGCTAATGCTAGTTGGGGTAAATTTATCA
ACTTACTAACTTACAAAGCCGAAAACAAAGGCAAAACACTAATGCAAATTGATAAATTTTTCCCTAGTTCTCAAATATGT
AGCAATTGCGGAAGCAATACAGGTAAAAAGCCTCTGCATATTAGGAGTTTTACTTGCCCTAATTGCAATACAAAACACCA
TAGAGACTTAAATGCTAGTATCAATATAAGAAATTATGCGCTAGGTATCATTGATGATAGGTATAAAATAAAATTAGATA
AATCTAGGGTAGGAATTACCCAAAGTTACGCTTGTAAAGATAGCTCTAGTGGGGTATCAAAATATGGTTACATACTTGAT
ACTAGCTATCTATCGTTGAAGCAAGAAGCCCACTTGCTTTAG

Upstream 100 bases:

>100_bases
CTTTAAATTATATTTAAAGCTTCTCCTTTTATTATTTATGCTATAATTATATTAAGTTAATAAATAGAAATTAACAATAA
AATTAAAAGAAAGGCTATCT

Downstream 100 bases:

>100_bases
CAGGTGGGTGATTCACATTGACAATAATAGCCTTTTATCTATCTTTTAAATTATCTAAAGTCATTATGTTTCCTAAATTA
ATAATAAATATTATAATAAA

Product: ISHa1675 transposase B

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MLSAVKYRIYPTKAQKELIHKHFGCARVVYNHFLDYRQKQFAKGIKETYFTMQKELTLLKKQDEYKYLNECASQSLQMAL
RQLVTALDNFFAKRAKYPNFKSKKNARQSYAIPQNIKLDNKKVYASKFTEGIKTKIHRKLDKDCIIKQAFISKIADEYYI
AISYENNKSLPKPKVIENAVGLDMGLENLIIRSDCVIYKNHKFLQDKENKLIKLQKQLSKKQKGSNNYAKTKLKVAKAHQ
KITRARDDYLHKISDEITNLYDFIAVENLNIKGLIKNKHLSKSIANASWGKFINLLTYKAENKGKTLMQIDKFFPSSQIC
SNCGSNTGKKPLHIRSFTCPNCNTKHHRDLNASINIRNYALGIIDDRYKIKLDKSRVGITQSYACKDSSSGVSKYGYILD
TSYLSLKQEAHLL

Sequences:

>Translated_413_residues
MLSAVKYRIYPTKAQKELIHKHFGCARVVYNHFLDYRQKQFAKGIKETYFTMQKELTLLKKQDEYKYLNECASQSLQMAL
RQLVTALDNFFAKRAKYPNFKSKKNARQSYAIPQNIKLDNKKVYASKFTEGIKTKIHRKLDKDCIIKQAFISKIADEYYI
AISYENNKSLPKPKVIENAVGLDMGLENLIIRSDCVIYKNHKFLQDKENKLIKLQKQLSKKQKGSNNYAKTKLKVAKAHQ
KITRARDDYLHKISDEITNLYDFIAVENLNIKGLIKNKHLSKSIANASWGKFINLLTYKAENKGKTLMQIDKFFPSSQIC
SNCGSNTGKKPLHIRSFTCPNCNTKHHRDLNASINIRNYALGIIDDRYKIKLDKSRVGITQSYACKDSSSGVSKYGYILD
TSYLSLKQEAHLL
>Mature_413_residues
MLSAVKYRIYPTKAQKELIHKHFGCARVVYNHFLDYRQKQFAKGIKETYFTMQKELTLLKKQDEYKYLNECASQSLQMAL
RQLVTALDNFFAKRAKYPNFKSKKNARQSYAIPQNIKLDNKKVYASKFTEGIKTKIHRKLDKDCIIKQAFISKIADEYYI
AISYENNKSLPKPKVIENAVGLDMGLENLIIRSDCVIYKNHKFLQDKENKLIKLQKQLSKKQKGSNNYAKTKLKVAKAHQ
KITRARDDYLHKISDEITNLYDFIAVENLNIKGLIKNKHLSKSIANASWGKFINLLTYKAENKGKTLMQIDKFFPSSQIC
SNCGSNTGKKPLHIRSFTCPNCNTKHHRDLNASINIRNYALGIIDDRYKIKLDKSRVGITQSYACKDSSSGVSKYGYILD
TSYLSLKQEAHLL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=357, Percent_Identity=29.1316526610644, Blast_Score=149, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 47704; Mature: 47704

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAVKYRIYPTKAQKELIHKHFGCARVVYNHFLDYRQKQFAKGIKETYFTMQKELTLLK
CCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQDEYKYLNECASQSLQMALRQLVTALDNFFAKRAKYPNFKSKKNARQSYAIPQNIKLDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCCEECC
KKVYASKFTEGIKTKIHRKLDKDCIIKQAFISKIADEYYIAISYENNKSLPKPKVIENAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
GLDMGLENLIIRSDCVIYKNHKFLQDKENKLIKLQKQLSKKQKGSNNYAKTKLKVAKAHQ
CCCCCHHHHEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
KITRARDDYLHKISDEITNLYDFIAVENLNIKGLIKNKHLSKSIANASWGKFINLLTYKA
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCHHHHHHHHCCHHHHHHHHHEEEC
ENKGKTLMQIDKFFPSSQICSNCGSNTGKKPLHIRSFTCPNCNTKHHRDLNASINIRNYA
CCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEE
LGIIDDRYKIKLDKSRVGITQSYACKDSSSGVSKYGYILDTSYLSLKQEAHLL
EEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCEEEECHHHHHHHHHCCC
>Mature Secondary Structure
MLSAVKYRIYPTKAQKELIHKHFGCARVVYNHFLDYRQKQFAKGIKETYFTMQKELTLLK
CCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQDEYKYLNECASQSLQMALRQLVTALDNFFAKRAKYPNFKSKKNARQSYAIPQNIKLDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCCEECC
KKVYASKFTEGIKTKIHRKLDKDCIIKQAFISKIADEYYIAISYENNKSLPKPKVIENAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
GLDMGLENLIIRSDCVIYKNHKFLQDKENKLIKLQKQLSKKQKGSNNYAKTKLKVAKAHQ
CCCCCHHHHEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
KITRARDDYLHKISDEITNLYDFIAVENLNIKGLIKNKHLSKSIANASWGKFINLLTYKA
HHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCHHHHHHHHCCHHHHHHHHHEEEC
ENKGKTLMQIDKFFPSSQICSNCGSNTGKKPLHIRSFTCPNCNTKHHRDLNASINIRNYA
CCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEE
LGIIDDRYKIKLDKSRVGITQSYACKDSSSGVSKYGYILDTSYLSLKQEAHLL
EEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCEEEECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]