Click here to switch to the map view.

The map label for this gene is alr [H]

Identifier: 153951186

GI number: 153951186

Start: 805212

End: 806198

Strand: Direct

Name: alr [H]

Synonym: JJD26997_0907

Alternate gene names: 153951186

Gene position: 805212-806198 (Clockwise)

Preceding gene: 153952096

Following gene: 153952499

Centisome position: 43.64

GC content: 28.67

Gene sequence:

>987_bases
ATGTCTTTAATAAAAATTGATCAAAAAGCTTATGAATATAATTTAAGACATATTGCTAAAAAAATAGGAAGTTTTCAAAG
ATTAATTTGCGTTTTTAAAGATAATGCATATGGACATGGAGCTAAGCTTTTAGCTCCATTAGCCAAAAATTTAGGAGTTT
CTTTTGTTGCTGTTAAGAGTGAAGAAGAAGCTCGAGAAATCGAAGAATTTTTTGAGAATATATTAATACTATCACATCGT
CCTCATGGTAATGAAAATTCTCGATTTATTTATGCTTTAAATGATATTTCCCAAGTAAAAAATTACAAGCAAGATATAAA
AATACATCTAAAAATAGATACAGGTATGCATCGTAATGGAATTTGTGTAGAAAATTTAGAGCATGCTATAGATCTTATTC
GAAGTAGTAATTTAAAACTTACTGGAATGTTTACACATTTTGCTAGTGCAGATGAAATGGATGGAAGTTTTTTTGTTCAA
AAAGAAAATTTTCAAAAAGCTAAAAAGATGGTAAAAAAATATTTTTCAAATTTATTATTTCATTCGCATAATTCTGCAGC
ATTATTTAGAGGGAAAATTCCTGAAGATGAATATTGTAGAATTGGACTTGTTCAATTTGGATATGGGGATTCAAATTTAA
AAAGAATTTTAAGTTTGTATGCTCATAGATTAAGTCAAAGGATTTTACAAAAAGGACAGAGCATAGGATATGGAGGTATT
TTTACTGCTGTAAAGGATATGGAAGTAGCAACTTATGATTTGGGTTATGCTGATGGTCTTTTCCGTTACAATGGAAAAGG
GGAGTTAGTGCTTGGAAATGGAAAAGCAATGCTTGGAAAGATGTCAATGGATAGTTTTTCTTGTGAAAATTCTGGTGAGG
AAATTTGCGTGTTTAAAGATGCTGATATTTGGGCTGATTTTTTTCATACTATTAACTATGAAATTTTAGTAAAATTAAAT
CCTAATATTCAAAGAGTTCTAGTATAA

Upstream 100 bases:

>100_bases
TGAGGATTATTACACTAAAAACTATCAGTTTAGAGGCGATAAAATTTTATACGTTAAGATAGATAGTAAAGGTAAAATGA
AAATTTTAGCAGAGCAATAA

Downstream 100 bases:

>100_bases
ATATGTTTAATATAGTTTTAGTTCACCCTAGAATACCGCAAAATACAGGTAGTATAGGTAGAATGTGCTTTAATGCTGGT
TTTAAACTTCATATTGTTAA

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEEEAREIEEFFENILILSHR
PHGNENSRFIYALNDISQVKNYKQDIKIHLKIDTGMHRNGICVENLEHAIDLIRSSNLKLTGMFTHFASADEMDGSFFVQ
KENFQKAKKMVKKYFSNLLFHSHNSAALFRGKIPEDEYCRIGLVQFGYGDSNLKRILSLYAHRLSQRILQKGQSIGYGGI
FTAVKDMEVATYDLGYADGLFRYNGKGELVLGNGKAMLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLN
PNIQRVLV

Sequences:

>Translated_328_residues
MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEEEAREIEEFFENILILSHR
PHGNENSRFIYALNDISQVKNYKQDIKIHLKIDTGMHRNGICVENLEHAIDLIRSSNLKLTGMFTHFASADEMDGSFFVQ
KENFQKAKKMVKKYFSNLLFHSHNSAALFRGKIPEDEYCRIGLVQFGYGDSNLKRILSLYAHRLSQRILQKGQSIGYGGI
FTAVKDMEVATYDLGYADGLFRYNGKGELVLGNGKAMLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLN
PNIQRVLV
>Mature_327_residues
SLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRP
HGNENSRFIYALNDISQVKNYKQDIKIHLKIDTGMHRNGICVENLEHAIDLIRSSNLKLTGMFTHFASADEMDGSFFVQK
ENFQKAKKMVKKYFSNLLFHSHNSAALFRGKIPEDEYCRIGLVQFGYGDSNLKRILSLYAHRLSQRILQKGQSIGYGGIF
TAVKDMEVATYDLGYADGLFRYNGKGELVLGNGKAMLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNP
NIQRVLV

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1787439, Length=364, Percent_Identity=23.6263736263736, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608
- InterPro:   IPR020622 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 37334; Mature: 37203

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00395 ALANINE_RACEMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS
CCEEEECHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCHHHHHHHHHHCCEEEEEECC
EEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNYKQDIKIHLKIDTGMHRNG
HHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCHHHHHCCCCCEEEEEEEECCCCCCC
ICVENLEHAIDLIRSSNLKLTGMFTHFASADEMDGSFFVQKENFQKAKKMVKKYFSNLLF
CCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHE
HSHNSAALFRGKIPEDEYCRIGLVQFGYGDSNLKRILSLYAHRLSQRILQKGQSIGYGGI
ECCCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
FTAVKDMEVATYDLGYADGLFRYNGKGELVLGNGKAMLGKMSMDSFSCENSGEEICVFKD
HHHHHCCEEEEEECCCCCCEEEECCCCCEEEECCCEEEEECCCCCCCCCCCCCEEEEEEC
ADIWADFFHTINYEILVKLNPNIQRVLV
CHHHHHHHHHCCEEEEEEECCCEEEECC
>Mature Secondary Structure 
SLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLAPLAKNLGVSFVAVKS
CEEEECHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCHHHHHHHHHHCCEEEEEECC
EEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNYKQDIKIHLKIDTGMHRNG
HHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCHHHHHCCCCCEEEEEEEECCCCCCC
ICVENLEHAIDLIRSSNLKLTGMFTHFASADEMDGSFFVQKENFQKAKKMVKKYFSNLLF
CCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHE
HSHNSAALFRGKIPEDEYCRIGLVQFGYGDSNLKRILSLYAHRLSQRILQKGQSIGYGGI
ECCCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
FTAVKDMEVATYDLGYADGLFRYNGKGELVLGNGKAMLGKMSMDSFSCENSGEEICVFKD
HHHHHCCEEEEEECCCCCCEEEECCCCCEEEECCCEEEEECCCCCCCCCCCCCEEEEEEC
ADIWADFFHTINYEILVKLNPNIQRVLV
CHHHHHHHHHCCEEEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA