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The map label for this gene is dapB-1 [H]

Identifier: 153937800

GI number: 153937800

Start: 866364

End: 867161

Strand: Direct

Name: dapB-1 [H]

Synonym: CLC_0847

Alternate gene names: 153937800

Gene position: 866364-867161 (Clockwise)

Preceding gene: 153936841

Following gene: 153934546

Centisome position: 23.04

GC content: 31.95

Gene sequence:

>798_bases
ATGAAGATAATAGTTATTGGACCAAGGGGAAAAATGGGAAGCTTAGTTACTAAATCTTGTTATACTAATGAAAATATAGA
ACTTGTGGCAGCAGTAGCCCCAAAGGAAAGGGATTACATAGGACAGGATCTTGGTATAGTTGCAAACCTAGGCAAAAATA
TAGATTGTAAAGTTGTAGATAATTTAGAGAATGTTATAGATAAATGTGATTGCATTATAGATTTCACAGATCCAGAAACT
TCTATGGATGTATTTGAAAAAGCTTTAAAGAGTAAAAAATCTGTGGTTTGTGGTACTACTGGGTTTTCAGAAGAAGAAAT
AAATAGGATAAATGAAATTTCAAAGGAAATACCACTTGTTCTAGCAGGAAATACTTCTATGGTTGTAAATCTTATGTATA
AATTAGTAGAACTTGCAGCTAATACTATAGGCAATATGTCTGATATTGAAATAATAGAAATGCATGATAGATATAAAAAG
GATGCTCCAAGTGGAACTTCTTTAGAAATTGGAGAAGTTTTAGCTAAAACATTTAATAAGGAATTGAAAGAATTAGCTCA
ATTCGGAAGATGTGGAAAAGGTGAAAGAGAAGAAGGAAAAATTGCATATCATTCCTTAAGAGCAGGAGATATTTCAAGTA
GTCATACAGTTATGTTTGGTCTTATGGGGGAAAGATTAGAAATAACTCATCATGCTCATAATTGGGAGTGTTTTGCCAAT
GGAGGCTGTCAAGCTGCCTTATTTTTAAGAGACAAAAAACCAGGAATATATTCCATGAAAGATGTATTAGGTTTATAA

Upstream 100 bases:

>100_bases
TTAGTGTAGTTAATGAATGAAATTATACATAATCTAATAAATTTTTTCCTAAATAAAAAATACTTATTTATTTAGGAAGA
ATAAACAGGGGGTTATACTA

Downstream 100 bases:

>100_bases
AAATATTTAGGAGATGATTTTGTGAAGAATTTTGTATCTACTAAGTGGTTACAGGATCATTTAGAGGATGAAAATATAGT
CATTGTAGACTGTAGAGGAG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKIIVIGPRGKMGSLVTKSCYTNENIELVAAVAPKERDYIGQDLGIVANLGKNIDCKVVDNLENVIDKCDCIIDFTDPET
SMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPLVLAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKK
DAPSGTSLEIGEVLAKTFNKELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
GGCQAALFLRDKKPGIYSMKDVLGL

Sequences:

>Translated_265_residues
MKIIVIGPRGKMGSLVTKSCYTNENIELVAAVAPKERDYIGQDLGIVANLGKNIDCKVVDNLENVIDKCDCIIDFTDPET
SMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPLVLAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKK
DAPSGTSLEIGEVLAKTFNKELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
GGCQAALFLRDKKPGIYSMKDVLGL
>Mature_265_residues
MKIIVIGPRGKMGSLVTKSCYTNENIELVAAVAPKERDYIGQDLGIVANLGKNIDCKVVDNLENVIDKCDCIIDFTDPET
SMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPLVLAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKK
DAPSGTSLEIGEVLAKTFNKELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
GGCQAALFLRDKKPGIYSMKDVLGL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=266, Percent_Identity=41.3533834586466, Blast_Score=194, Evalue=6e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29182; Mature: 29182

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIVIGPRGKMGSLVTKSCYTNENIELVAAVAPKERDYIGQDLGIVANLGKNIDCKVVD
CEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHCCCCHHHHHHCCCCCCEEEHH
NLENVIDKCDCIIDFTDPETSMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPLV
HHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
LAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKKDAPSGTSLEIGEVLAKTFNK
EECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHH
ELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCEEEEC
GGCQAALFLRDKKPGIYSMKDVLGL
CCCEEEEEEECCCCCCCCHHHHHCC
>Mature Secondary Structure
MKIIVIGPRGKMGSLVTKSCYTNENIELVAAVAPKERDYIGQDLGIVANLGKNIDCKVVD
CEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHCCCCHHHHHHCCCCCCEEEHH
NLENVIDKCDCIIDFTDPETSMDVFEKALKSKKSVVCGTTGFSEEEINRINEISKEIPLV
HHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEE
LAGNTSMVVNLMYKLVELAANTIGNMSDIEIIEMHDRYKKDAPSGTSLEIGEVLAKTFNK
EECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHH
ELKELAQFGRCGKGEREEGKIAYHSLRAGDISSSHTVMFGLMGERLEITHHAHNWECFAN
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCEEEEC
GGCQAALFLRDKKPGIYSMKDVLGL
CCCEEEEEEECCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA