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The map label for this gene is psd-2

Identifier: 153937664

GI number: 153937664

Start: 30625

End: 31512

Strand: Reverse

Name: psd-2

Synonym: CLC_0042

Alternate gene names: 153937664

Gene position: 31512-30625 (Counterclockwise)

Preceding gene: 153937271

Following gene: 153936685

Centisome position: 0.84

GC content: 23.2

Gene sequence:

>888_bases
ATGATAAAATATTATAATAGAAAAAATAAAGATTATGATATAGAAAAAGTTGCTGGAGAAAAATATTTAAATTGGACCTA
TTCCTCACCTATTGGTATGAATCTTTTAGAGGTATTTATAAAAAAGAAATTTTTTTCAAAAATATATGGATTTTATTGTG
ATAGAAGGTTAAGTCATAAAAAAATAAATAAATTTATTAATGATTTTAAAATTGACATGTCTTTAAGTGAAAATCAATCA
AGTAATTTTAAGTGTTTTAATGATTTTTTCACTAGAAAATTAAAAAAAGAAGCTAGACCTATAAAAACTGATAAAAATTT
ATTAATATCCCCAGGTGATGGTAAAATACTTGCATATGAAAATCTAAATCTAAATTCAGTAACTGAAGTAAAAGGAATCA
ATTATAGTTTTTATGAATTAATAAATAATGATTCATTAGCAAAAGAATATGACAATGGAACTTGCTTAGTTTTAAGACTG
TGTCCCACAGATTATCATAGATTTCATTTTATAGACAATGGTATCTGTGAAAATACTATAAAACTAAAGGGTTTTTACTA
TTCAGTAAATCCAATTGCATTATCTAAAATTCCTAGTGTATTTTGCAAAAATAAAAGAGAGTATTCCATTTTTCATAGTG
AAAATTTCGGTGATATAATATTTATGGAAGTTGGAGCTACTTGTGTAGGTTCTATAATACAGACTTATAAACCCAATACT
AAAATTTTAAAGGGTGATGAAAAAGGTTATTTTAAATTTGGAGGATCCACAGTAATTTTATTCTTCAAAAAAAATACTAT
AAAAATTGATAATGATATATTAAATCAAAGTAAATTAGGATATGAAACATCTGTTGTAATGGGTGAATCTATTGGAATAA
AAAAATAA

Upstream 100 bases:

>100_bases
TATTTATGAATATTTCCGCTATTTCTATTAATTTATTGACATTTATAGCTAATTAAATAATAATTAATTTATCATATTTT
ACTTAGAAAGAGGTTTTTTA

Downstream 100 bases:

>100_bases
AAAAAGTTTGTCATTTTAGCCATTATTATTTCTGAACACGGAGCAAAATTTATTTTTTTAGCCAAAAAGATATAGCACTA
ATTTTTAGTGCTATATCTCC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MIKYYNRKNKDYDIEKVAGEKYLNWTYSSPIGMNLLEVFIKKKFFSKIYGFYCDRRLSHKKINKFINDFKIDMSLSENQS
SNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYENLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLVLRL
CPTDYHRFHFIDNGICENTIKLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFGDIIFMEVGATCVGSIIQTYKPNT
KILKGDEKGYFKFGGSTVILFFKKNTIKIDNDILNQSKLGYETSVVMGESIGIKK

Sequences:

>Translated_295_residues
MIKYYNRKNKDYDIEKVAGEKYLNWTYSSPIGMNLLEVFIKKKFFSKIYGFYCDRRLSHKKINKFINDFKIDMSLSENQS
SNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYENLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLVLRL
CPTDYHRFHFIDNGICENTIKLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFGDIIFMEVGATCVGSIIQTYKPNT
KILKGDEKGYFKFGGSTVILFFKKNTIKIDNDILNQSKLGYETSVVMGESIGIKK
>Mature_295_residues
MIKYYNRKNKDYDIEKVAGEKYLNWTYSSPIGMNLLEVFIKKKFFSKIYGFYCDRRLSHKKINKFINDFKIDMSLSENQS
SNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYENLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLVLRL
CPTDYHRFHFIDNGICENTIKLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFGDIIFMEVGATCVGSIIQTYKPNT
KILKGDEKGYFKFGGSTVILFFKKNTIKIDNDILNQSKLGYETSVVMGESIGIKK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=314, Percent_Identity=24.5222929936306, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=31.8996415770609, Blast_Score=138, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI71980843, Length=209, Percent_Identity=28.7081339712919, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71980840, Length=209, Percent_Identity=28.7081339712919, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6321609, Length=241, Percent_Identity=38.1742738589212, Blast_Score=149, Evalue=6e-37,
Organism=Drosophila melanogaster, GI24649526, Length=314, Percent_Identity=26.4331210191083, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24649528, Length=314, Percent_Identity=26.4331210191083, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24649524, Length=314, Percent_Identity=26.4331210191083, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CLOB1 (A7FQ59)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001382431.1
- STRING:   A7FQ59
- GeneID:   5397028
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_0034
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   NKREWSI
- ProtClustDB:   PRK00723
- BioCyc:   CBOT441770:CLB_0034-MONOMER
- HAMAP:   MF_00663
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 34179; Mature: 34179

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKYYNRKNKDYDIEKVAGEKYLNWTYSSPIGMNLLEVFIKKKFFSKIYGFYCDRRLSHK
CCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KINKFINDFKIDMSLSENQSSNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYE
HHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
NLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLVLRLCPTDYHRFHFIDNGICENTI
CCCCCCCCEECCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEE
KLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFGDIIFMEVGATCVGSIIQTYKPNT
EEEEEEEEECCEEHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCC
KILKGDEKGYFKFGGSTVILFFKKNTIKIDNDILNQSKLGYETSVVMGESIGIKK
EEEECCCCCEEEECCCEEEEEEECCEEEECHHHHCCHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MIKYYNRKNKDYDIEKVAGEKYLNWTYSSPIGMNLLEVFIKKKFFSKIYGFYCDRRLSHK
CCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KINKFINDFKIDMSLSENQSSNFKCFNDFFTRKLKKEARPIKTDKNLLISPGDGKILAYE
HHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
NLNLNSVTEVKGINYSFYELINNDSLAKEYDNGTCLVLRLCPTDYHRFHFIDNGICENTI
CCCCCCCCEECCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCEE
KLKGFYYSVNPIALSKIPSVFCKNKREYSIFHSENFGDIIFMEVGATCVGSIIQTYKPNT
EEEEEEEEECCEEHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCC
KILKGDEKGYFKFGGSTVILFFKKNTIKIDNDILNQSKLGYETSVVMGESIGIKK
EEEECCCCCEEEECCCEEEEEEECCEEEECHHHHCCHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA