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The map label for this gene is 153937466

Identifier: 153937466

GI number: 153937466

Start: 818099

End: 818638

Strand: Direct

Name: 153937466

Synonym: CLC_0793

Alternate gene names: NA

Gene position: 818099-818638 (Clockwise)

Preceding gene: 153937810

Following gene: 153934805

Centisome position: 21.75

GC content: 26.85

Gene sequence:

>540_bases
ATGTATAAATTGCTTGAGAAATATAGAAATGGGGATATAGGTGCTTTAAACGAGATTATAGAAAATTTTAATCCACTTAT
ATTGAAAGAGGCTTCAAGATGGAGAATAGGCGGTTATGAGTATGAAGATTTGGTGCAACATGGTTATCTTTCAGTTATAA
AAGCTGTTAATATGTTTAAAGGTGAAGAAAGTAAGTTTGTTCCCTATTGTATAAATGCAATTAAAACAAATTATAAAGCT
CTCTTAAAAGGAGAGATAAAGCACCATAGAGAAATACCAGATGAAAATATATTAAATAAAGGCAATGAATATATGTTTAC
CATAGAGGATGAAATAATAGCTTATGAAAAAACAAAGGAGATATATGAAGCATTAGATAAGCTTACACAAGAGGAAAAAC
AGGTTATAAATGATTTTTATATTAAAAATAATAGTCTTAATAAAATAGCAGAGGATACAAATAAAACTTATAATTCAGTA
AGATATACTAAAGATAAAGCAATAAAAAAACTGCAGAAAATACTTGAAGAGCATAGTTAA

Upstream 100 bases:

>100_bases
GGATAGATGGAATGATTTTGAACAAAGGGAATATGATTTTGAAAAGTTAGAAAGAAAGTTATTAGGCTGGGAAATGGCTT
AAAAAAGAGGGGGTTTTTTT

Downstream 100 bases:

>100_bases
GGATAGAGTACAGAGTATAGAGGGCATAAGAATTAGATTGGGTGGCTAGAATTAAGATATATTATTTTAATTCTGGAGGA
TTATGATGAATAGCGTAGCT

Product: sigma-70 family RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor Family; Sigma-70 Region 2 Domain-Containing Protein; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor RpoE-Like Protein

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MYKLLEKYRNGDIGALNEIIENFNPLILKEASRWRIGGYEYEDLVQHGYLSVIKAVNMFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSV
RYTKDKAIKKLQKILEEHS

Sequences:

>Translated_179_residues
MYKLLEKYRNGDIGALNEIIENFNPLILKEASRWRIGGYEYEDLVQHGYLSVIKAVNMFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSV
RYTKDKAIKKLQKILEEHS
>Mature_179_residues
MYKLLEKYRNGDIGALNEIIENFNPLILKEASRWRIGGYEYEDLVQHGYLSVIKAVNMFKGEESKFVPYCINAIKTNYKA
LLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKEIYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSV
RYTKDKAIKKLQKILEEHS

Specific function: Unknown

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21108; Mature: 21108

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLLEKYRNGDIGALNEIIENFNPLILKEASRWRIGGYEYEDLVQHGYLSVIKAVNMFK
CHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GEESKFVPYCINAIKTNYKALLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEHHHHHHHHHHHH
IYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSVRYTKDKAIKKLQKILEEHS
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYKLLEKYRNGDIGALNEIIENFNPLILKEASRWRIGGYEYEDLVQHGYLSVIKAVNMFK
CHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GEESKFVPYCINAIKTNYKALLKGEIKHHREIPDENILNKGNEYMFTIEDEIIAYEKTKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEHHHHHHHHHHHH
IYEALDKLTQEEKQVINDFYIKNNSLNKIAEDTNKTYNSVRYTKDKAIKKLQKILEEHS
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA