Click here to switch to the map view.

The map label for this gene is 153937022

Identifier: 153937022

GI number: 153937022

Start: 16601

End: 19282

Strand: Direct

Name: 153937022

Synonym: CLC_0020

Alternate gene names: NA

Gene position: 16601-19282 (Clockwise)

Preceding gene: 153936038

Following gene: 153937535

Centisome position: 0.44

GC content: 22.74

Gene sequence:

>2682_bases
ATGAAAAATAAAAAAGCTTTGTTTATACCATTATTCATAATAATTTTATTTATAGCATTTTTTAATAAAATAATAAATTT
TATTATTAATATAAAATGGTTTAAAGAAGTAAACTATTTAGCGGTATATTTTACTAAAATGAGAGCGATAATTATTTTAA
TGATTCCTATATTTATAATATTTTTTATATCTATATGGATGTATTATAAAAGCCTTATTATAAATAAGAATAAAAGTGTA
GTAGATATAGGATTAAATAAAAACAATTATGGGAAAAAATTATTCTTTATTTTTAACTTTATAGTATCTATATTTTTAGC
TTATATATTTTCAAGCAGTTATTGGTATAGAATATTACAATTTAATAATTCTGTAGATTTTAATGTGAAGGATCCTATCT
TTTTTAAAGATGTTTCTTTTTATATATTTAAATTGCCACTTTTTGAATCTTTATATAAAGTTATAATTTCTTTATTATTA
TTTTTAGTTATAACAACATTTATAGCTTATTTTATTTTAGAAGCTAAATATAAAATTCAAAGCAAAAAGGATATAAATTT
AAAAAATATAAATCATGGCATAAAATCCTTTGCAGGAAAACAATTAGCTATTGTATCTGGTCTTATAATTTTATTTATAT
CCTTTGGACATTTAATAAAAATATGGAATTTAGTTTATAGCTCTAATGGAGTATCTTTTGGTGCTAGCTATACTGATGTT
CATGCTACTTTATTATTCTATAAAATAATAGTAGTAATTACACTAATTTCATCTATAGTAACATTATTAAGTATAGTAAA
AGGTAAATTTAAACCAGTAAGTATATGCATAGGTATAACTATATTTTTGATAGTATCACAAAATATAGCATCTTTTTTAG
TACAAAACTTTATAGTCAAATCTAATGAAAAAACTTTAGAGCAGCCATATATAAAAAATAATATAGATTTAACAAGAAAA
GCTTTTGCATTAGATGATATTGAAATAAGGGATTTTGATATTAAAAATGATTTACAAAAGCAAGATATTACAGATAACAA
AGCAAGCATAGACAATATAAGAATAAATTCTTTTAAGCCTACATTAGAATTTTATAATCAAGTTCAAATAATAAGATATT
ATTATACTTTTAATGACATAGATATAGATAGGTATAATATAAATGGAAAATACAATCAAGTATTCCTAGCTGCAAGAGAA
ATAGATACAGATGCATTGAACCCAAATACATGGCAAAATAGACACTTAATATATACACATGGTTTTGGAGCAGTTATGAA
TAAAGTAAATTCTGTAACAAGTGAAGGACAACCTGACTTTGTTATAAAAGATATACCACCTTATAATAAAACAAATATAA
AATTGGCTAATCCTAGGATATATTTTGGAGAAAAGACTAATGACTATGTTATAGTAAACACTAAGATAAATGAATTTGAT
TATCCTAAAGAAGATTCTAATAAAACTAATAAATATAATGGACATGCAGGGATAAAAATGAGCTTTATTAATAGATTATT
ATTTGCTATAAATAAAAAAGATATTAATTTTCTTTTATCAAAGGATATAAAAAAAGATAGTAAAATAATAATAAATAGAA
ATATTGTAGAGAGGGCAAAAAAAATAGCACCCTTTTTAACTTATGATAGTGATCCTTATATGGTTATATATAATGGCAAA
ATATATTGGATAATAGATGCTTATACTACTACAAATAGATATCCTTATTCAGAGCCTTATGATAGTATAAATTATATAAG
GAATTCAGCTAAAGTAGTAATAGATTCTGTAGATGGAGATATCAATTTTTATATTACAGATAAAAAGGATCCTATAGTTA
ATAATTATGCTAAAATATTTAAGGGATTATTTAAAGAAGAAAAAGATGCCCCTAAAGAAATAAGAGAACATTTTAGATAT
CCAAAAGATTTATTTAGTATTCAAAGCAAAGTATTAGGAAAATATCATGTAAAAGATCCTGGTGTGTTTTATAATGGTGA
AGATCTATGGGAAGTGTCTAAGGATCAAAAACATGTTGAAGGAGAAACAAATACAAATGATGCTCCTTATATAATTATGA
AATTACCAGACCAAAATAAAGAAGAAATGGTACTTTTGAATTATTTTAATGTAATGAAAAAGGATAATATGATAGCTTTA
TTTGGAGCAAGAATGGATGGAGAGCAATATGGTAAAAAAATATTATATAAACTTCCATCAGACAAAACAGTATATAGTCC
ATATTTATTTAAGCAAAAAATAAATCAAGATACTAATATATCTAAGGAATTATCATTATGGAATAGAGAAGGTTCAAAGG
TGCAATATGGAGACACTATAATATTACCTATAAAAAATTCTCTTCTTTATATAGAACCACTATATTTGCGAGCTAGTGGG
AAAAATAGTATACCAGAAATGAAAAGAGTAATACTATCCTATAATGATAAATTAGTTTTATCATCTAGTATTCAGGAAGG
TATAAAAGAAATATTTAATTCTAAAGATAATAAAATCAATGATAAAAATGAAAAAGATAGTACAAAGACTATAGATGATT
CAAAATTGAAAAAAGCTCAAGAATATTATAATAAAGCCATAGAAGCTCAAAAAAATGGAGACTGGACTAAATATGGAGAA
AATATAAATGAATTAGGTAATATATTAAATAGTATAAAATAA

Upstream 100 bases:

>100_bases
ATAAGATGTTTTTGTTGTCAGGAACTTTGTCCCAAAGGAGCTATAGAAACTAAATATTCTTTTATTGGAAGATTTTTAAA
TAGAGATGGCAGGTGATAAA

Downstream 100 bases:

>100_bases
AAGATATAATAACTATGATTAATATCTGTAAAGAACCCCATGTATTTATAAGGGGTTCTTATTCATTTTTTGATTAAATT
ATCATTTATATGTAAATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 893; Mature: 893

Protein sequence:

>893_residues
MKNKKALFIPLFIIILFIAFFNKIINFIINIKWFKEVNYLAVYFTKMRAIIILMIPIFIIFFISIWMYYKSLIINKNKSV
VDIGLNKNNYGKKLFFIFNFIVSIFLAYIFSSSYWYRILQFNNSVDFNVKDPIFFKDVSFYIFKLPLFESLYKVIISLLL
FLVITTFIAYFILEAKYKIQSKKDINLKNINHGIKSFAGKQLAIVSGLIILFISFGHLIKIWNLVYSSNGVSFGASYTDV
HATLLFYKIIVVITLISSIVTLLSIVKGKFKPVSICIGITIFLIVSQNIASFLVQNFIVKSNEKTLEQPYIKNNIDLTRK
AFALDDIEIRDFDIKNDLQKQDITDNKASIDNIRINSFKPTLEFYNQVQIIRYYYTFNDIDIDRYNINGKYNQVFLAARE
IDTDALNPNTWQNRHLIYTHGFGAVMNKVNSVTSEGQPDFVIKDIPPYNKTNIKLANPRIYFGEKTNDYVIVNTKINEFD
YPKEDSNKTNKYNGHAGIKMSFINRLLFAINKKDINFLLSKDIKKDSKIIINRNIVERAKKIAPFLTYDSDPYMVIYNGK
IYWIIDAYTTTNRYPYSEPYDSINYIRNSAKVVIDSVDGDINFYITDKKDPIVNNYAKIFKGLFKEEKDAPKEIREHFRY
PKDLFSIQSKVLGKYHVKDPGVFYNGEDLWEVSKDQKHVEGETNTNDAPYIIMKLPDQNKEEMVLLNYFNVMKKDNMIAL
FGARMDGEQYGKKILYKLPSDKTVYSPYLFKQKINQDTNISKELSLWNREGSKVQYGDTIILPIKNSLLYIEPLYLRASG
KNSIPEMKRVILSYNDKLVLSSSIQEGIKEIFNSKDNKINDKNEKDSTKTIDDSKLKKAQEYYNKAIEAQKNGDWTKYGE
NINELGNILNSIK

Sequences:

>Translated_893_residues
MKNKKALFIPLFIIILFIAFFNKIINFIINIKWFKEVNYLAVYFTKMRAIIILMIPIFIIFFISIWMYYKSLIINKNKSV
VDIGLNKNNYGKKLFFIFNFIVSIFLAYIFSSSYWYRILQFNNSVDFNVKDPIFFKDVSFYIFKLPLFESLYKVIISLLL
FLVITTFIAYFILEAKYKIQSKKDINLKNINHGIKSFAGKQLAIVSGLIILFISFGHLIKIWNLVYSSNGVSFGASYTDV
HATLLFYKIIVVITLISSIVTLLSIVKGKFKPVSICIGITIFLIVSQNIASFLVQNFIVKSNEKTLEQPYIKNNIDLTRK
AFALDDIEIRDFDIKNDLQKQDITDNKASIDNIRINSFKPTLEFYNQVQIIRYYYTFNDIDIDRYNINGKYNQVFLAARE
IDTDALNPNTWQNRHLIYTHGFGAVMNKVNSVTSEGQPDFVIKDIPPYNKTNIKLANPRIYFGEKTNDYVIVNTKINEFD
YPKEDSNKTNKYNGHAGIKMSFINRLLFAINKKDINFLLSKDIKKDSKIIINRNIVERAKKIAPFLTYDSDPYMVIYNGK
IYWIIDAYTTTNRYPYSEPYDSINYIRNSAKVVIDSVDGDINFYITDKKDPIVNNYAKIFKGLFKEEKDAPKEIREHFRY
PKDLFSIQSKVLGKYHVKDPGVFYNGEDLWEVSKDQKHVEGETNTNDAPYIIMKLPDQNKEEMVLLNYFNVMKKDNMIAL
FGARMDGEQYGKKILYKLPSDKTVYSPYLFKQKINQDTNISKELSLWNREGSKVQYGDTIILPIKNSLLYIEPLYLRASG
KNSIPEMKRVILSYNDKLVLSSSIQEGIKEIFNSKDNKINDKNEKDSTKTIDDSKLKKAQEYYNKAIEAQKNGDWTKYGE
NINELGNILNSIK
>Mature_893_residues
MKNKKALFIPLFIIILFIAFFNKIINFIINIKWFKEVNYLAVYFTKMRAIIILMIPIFIIFFISIWMYYKSLIINKNKSV
VDIGLNKNNYGKKLFFIFNFIVSIFLAYIFSSSYWYRILQFNNSVDFNVKDPIFFKDVSFYIFKLPLFESLYKVIISLLL
FLVITTFIAYFILEAKYKIQSKKDINLKNINHGIKSFAGKQLAIVSGLIILFISFGHLIKIWNLVYSSNGVSFGASYTDV
HATLLFYKIIVVITLISSIVTLLSIVKGKFKPVSICIGITIFLIVSQNIASFLVQNFIVKSNEKTLEQPYIKNNIDLTRK
AFALDDIEIRDFDIKNDLQKQDITDNKASIDNIRINSFKPTLEFYNQVQIIRYYYTFNDIDIDRYNINGKYNQVFLAARE
IDTDALNPNTWQNRHLIYTHGFGAVMNKVNSVTSEGQPDFVIKDIPPYNKTNIKLANPRIYFGEKTNDYVIVNTKINEFD
YPKEDSNKTNKYNGHAGIKMSFINRLLFAINKKDINFLLSKDIKKDSKIIINRNIVERAKKIAPFLTYDSDPYMVIYNGK
IYWIIDAYTTTNRYPYSEPYDSINYIRNSAKVVIDSVDGDINFYITDKKDPIVNNYAKIFKGLFKEEKDAPKEIREHFRY
PKDLFSIQSKVLGKYHVKDPGVFYNGEDLWEVSKDQKHVEGETNTNDAPYIIMKLPDQNKEEMVLLNYFNVMKKDNMIAL
FGARMDGEQYGKKILYKLPSDKTVYSPYLFKQKINQDTNISKELSLWNREGSKVQYGDTIILPIKNSLLYIEPLYLRASG
KNSIPEMKRVILSYNDKLVLSSSIQEGIKEIFNSKDNKINDKNEKDSTKTIDDSKLKKAQEYYNKAIEAQKNGDWTKYGE
NINELGNILNSIK

Specific function: Unknown

COG id: COG1615

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0182 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y011_CLOBH (A5HXQ7)

Other databases:

- EMBL:   CP000727
- EMBL:   AM412317
- RefSeq:   YP_001252563.1
- RefSeq:   YP_001385973.1
- ProteinModelPortal:   A5HXQ7
- STRING:   A5HXQ7
- GeneID:   5184266
- GeneID:   5399006
- GenomeReviews:   AM412317_GR
- GenomeReviews:   CP000727_GR
- KEGG:   cbh:CLC_0020
- KEGG:   cbo:CBO0011
- eggNOG:   COG1615
- HOGENOM:   HBG538831
- OMA:   AHLRYPE
- ProtClustDB:   PRK00068
- BioCyc:   CBOT36826:CBO0011-MONOMER
- BioCyc:   CBOT441771:CLC_0020-MONOMER
- HAMAP:   MF_01600
- InterPro:   IPR005372

Pfam domain/function: PF03699 UPF0182

EC number: NA

Molecular weight: Translated: 104058; Mature: 104058

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x15963508)-; HASH(0x18ed5b90)-; HASH(0x18ed5d70)-; HASH(0x18ed4e9c)-; HASH(0x18ed6d8c)-; HASH(0x18ed5b9c)-; HASH(0x18ed3e4c)-;

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKALFIPLFIIILFIAFFNKIINFIINIKWFKEVNYLAVYFTKMRAIIILMIPIFII
CCCCCEEHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH
FFISIWMYYKSLIINKNKSVVDIGLNKNNYGKKLFFIFNFIVSIFLAYIFSSSYWYRILQ
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
FNNSVDFNVKDPIFFKDVSFYIFKLPLFESLYKVIISLLLFLVITTFIAYFILEAKYKIQ
ECCCCCCCCCCCEEEECCEEHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
SKKDINLKNINHGIKSFAGKQLAIVSGLIILFISFGHLIKIWNLVYSSNGVSFGASYTDV
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
HATLLFYKIIVVITLISSIVTLLSIVKGKFKPVSICIGITIFLIVSQNIASFLVQNFIVK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHC
SNEKTLEQPYIKNNIDLTRKAFALDDIEIRDFDIKNDLQKQDITDNKASIDNIRINSFKP
CCCHHHHCCCCCCCCCHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
TLEFYNQVQIIRYYYTFNDIDIDRYNINGKYNQVFLAAREIDTDALNPNTWQNRHLIYTH
HHHHHCCEEEEEEEEEECCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEC
GFGAVMNKVNSVTSEGQPDFVIKDIPPYNKTNIKLANPRIYFGEKTNDYVIVNTKINEFD
CHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEEECCCCCCEEEEEEEECCCC
YPKEDSNKTNKYNGHAGIKMSFINRLLFAINKKDINFLLSKDIKKDSKIIINRNIVERAK
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECHHHHHHH
KIAPFLTYDSDPYMVIYNGKIYWIIDAYTTTNRYPYSEPYDSINYIRNSAKVVIDSVDGD
HCCCEEEECCCCEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCC
INFYITDKKDPIVNNYAKIFKGLFKEEKDAPKEIREHFRYPKDLFSIQSKVLGKYHVKDP
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCEEECCCC
GVFYNGEDLWEVSKDQKHVEGETNTNDAPYIIMKLPDQNKEEMVLLNYFNVMKKDNMIAL
CEEECCCHHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHCCCCEEEE
FGARMDGEQYGKKILYKLPSDKTVYSPYLFKQKINQDTNISKELSLWNREGSKVQYGDTI
EECCCCHHHHCCHHEEECCCCCEECCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCEE
ILPIKNSLLYIEPLYLRASGKNSIPEMKRVILSYNDKLVLSSSIQEGIKEIFNSKDNKIN
EEEECCCEEEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCC
DKNEKDSTKTIDDSKLKKAQEYYNKAIEAQKNGDWTKYGENINELGNILNSIK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCH
>Mature Secondary Structure
MKNKKALFIPLFIIILFIAFFNKIINFIINIKWFKEVNYLAVYFTKMRAIIILMIPIFII
CCCCCEEHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH
FFISIWMYYKSLIINKNKSVVDIGLNKNNYGKKLFFIFNFIVSIFLAYIFSSSYWYRILQ
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
FNNSVDFNVKDPIFFKDVSFYIFKLPLFESLYKVIISLLLFLVITTFIAYFILEAKYKIQ
ECCCCCCCCCCCEEEECCEEHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
SKKDINLKNINHGIKSFAGKQLAIVSGLIILFISFGHLIKIWNLVYSSNGVSFGASYTDV
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
HATLLFYKIIVVITLISSIVTLLSIVKGKFKPVSICIGITIFLIVSQNIASFLVQNFIVK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHC
SNEKTLEQPYIKNNIDLTRKAFALDDIEIRDFDIKNDLQKQDITDNKASIDNIRINSFKP
CCCHHHHCCCCCCCCCHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
TLEFYNQVQIIRYYYTFNDIDIDRYNINGKYNQVFLAAREIDTDALNPNTWQNRHLIYTH
HHHHHCCEEEEEEEEEECCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEC
GFGAVMNKVNSVTSEGQPDFVIKDIPPYNKTNIKLANPRIYFGEKTNDYVIVNTKINEFD
CHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEEECCCCCCEEEEEEEECCCC
YPKEDSNKTNKYNGHAGIKMSFINRLLFAINKKDINFLLSKDIKKDSKIIINRNIVERAK
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECHHHHHHH
KIAPFLTYDSDPYMVIYNGKIYWIIDAYTTTNRYPYSEPYDSINYIRNSAKVVIDSVDGD
HCCCEEEECCCCEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCC
INFYITDKKDPIVNNYAKIFKGLFKEEKDAPKEIREHFRYPKDLFSIQSKVLGKYHVKDP
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCEEECCCC
GVFYNGEDLWEVSKDQKHVEGETNTNDAPYIIMKLPDQNKEEMVLLNYFNVMKKDNMIAL
CEEECCCHHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHCCCCEEEE
FGARMDGEQYGKKILYKLPSDKTVYSPYLFKQKINQDTNISKELSLWNREGSKVQYGDTI
EECCCCHHHHCCHHEEECCCCCEECCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCEE
ILPIKNSLLYIEPLYLRASGKNSIPEMKRVILSYNDKLVLSSSIQEGIKEIFNSKDNKIN
EEEECCCEEEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCCC
DKNEKDSTKTIDDSKLKKAQEYYNKAIEAQKNGDWTKYGENINELGNILNSIK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA