| Definition | Clostridium botulinum A str. Hall, complete genome. |
|---|---|
| Accession | NC_009698 |
| Length | 3,760,560 |
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The map label for this gene is cdr [H]
Identifier: 153936679
GI number: 153936679
Start: 211978
End: 214431
Strand: Direct
Name: cdr [H]
Synonym: CLC_0236
Alternate gene names: 153936679
Gene position: 211978-214431 (Clockwise)
Preceding gene: 153937457
Following gene: 153937615
Centisome position: 5.64
GC content: 31.58
Gene sequence:
>2454_bases ATGAATAAGAAGGTACTAATCATTGGCGGTGTAGCAGGAGGAGCTTCAGCAGCTGCAAGACTTAGAAGACTTGATGATAA TGCACAAATAATAATGTTTGAAAGAGGAGAACATATTTCCTTTGCCAATTGTGGATTACCTTATTATATAGGAGAAACTA TAAAGGAAAGAGATAATCTTTTAGTTCAAACTCCTGAGGCTATGATGGGTAGATTCAACATTGATGTTAGAGTAAACAGT GAGGTTATATCAATAAATACTAGAGAAAAGAAAGTTAAAGTAAACAGTAAAGAAAAGGGACTTTATGAGGAAACTTATGA CTATATAATAATGTCACCAGGGGCCACACCTATAAAACCACCTATAAAAGGAATAAATAGTTCGAAAATATTTACATTAA GAAATATTCCAGATACAGATAGAATAAAAGATTATGTAGACAATAAAGATGTTAAAAGTGCAGTAGTTGTTGGTGGGGGA TACATAGGGGTTGAGATGGCAGAGAATCTTAGAGAAAGAGGCATAAATGTGGTATTAGTTGAAGCTGCTCCCCATATATT AGCACCCTTTGATTCAGATATGGTTACTTTTGCCGAACAGGAACTACAGGATAACGGTGTAGGTTTAATTTTAGGAGATG GAGTTAAATCTTTTGAAGAAAATAATAATAAAATAAAATTATCCCTTCAAAGTGGTACTGAGCTAAATGCGGATATGATT ATATTGGCTATAGGTGTGAAACCGGATACAGAGTTTTTAAAAGGATCTTCAATAGAGATAGGCCCTAGGGGTCATATAAT AGTGGATAAACATATGAAAACTAATGTAGAGGGTATATATGCCGTAGGGGATGCTATAGAGGTAGTAGACTATATAAATG AAAATAAAACTGCTATACCATTGGCAGGCCCAGCAAATAAGCAGGGCAGAATAGCAGCAGATAATATATGTGAATTAAAT TCTTCTTATAAAGGAACTCAAGGAACTGCTATAATTAAAGTTTTTGGATTAACAGGTGCTAGTACAGGTAATAATGAAAG AACTTTATCTAAATTTAATATACCATATGAGGTAGTTTATACTCATTCTCAGTCCCATGCAAGTTACTATCCAGGAGGCA CACCAATAAGCTTAAAATTAATATTTGATACTAAAGGTAAGATCTTAGGGGCTCAAGTTTTTGGCTATGATGGAGTAGAT AAGAGAATAGATGATATTGCTATAGTTATAAGATTTGGTGGAACTATATATGATTTAGAAGAGTTAGAATTAGCTTATGC TCCTCCATATTCTTCGGCTAAGGATCCTGTTAATATGTTAGGGTTTGTAGCAGAAAATGTATTAACAGGTAAAGTAGAAA CTGTATTGTCTAAAGATATAGATAATAGAGATAAAGATAAAGTTATATTATTGGATGTAAGAGATGATATAGAAATTGAA AATGGTAAAATAGAGGGAGCAATAGAAATACCAATAAATCAATTAAGAAATAGATTAAGTGAAATTCCAAAGGATAACGA AGTATGGATATATTGTCAAATAGGGTTAAGAGGATATATTGCTGCTAGGATATTAATGGCTAATGGTTATAAGGTTAAAA ATCTTAATGGTGGATATAAAACTTACATTATGAATAAGTTTATACCTGAAAAAATAAATAAGATGCCAGAAGAGAAAATG AAGGGAAATAATGAAACTAAGGAAGAGGTAGCAGAAACTTTGGAACTAGATGCTTGTGGTTTAAGTTGCCCTGGACCATT AATGAAAGTAAACAATACTGTAAGTGAAATGAATGAAGGAGAAACTTTAAAAGTAAAAGCTTCAGATCCAGGATTTTATG TAGATATACAGTCTTGGTGTGAAAGAACAAATAATGAATTGTTAAGTGTATCAAAGGATAAAGGAATAGTAAAAGCTCTT ATTAAGAAAGGTAAAGAAAAATTACAAGTAGATGAAAAAGAAAGAAAAGGTAAAATCAAAGAAAATGATAATAAGACATT AGTTGTGTTTAGTGGAGATTTGGATAAAGCAATAGCATCCTTTGTTATAGCAAATGGTGCTGTAGCTATGGGGAAAAAGG TAACTATGTTCTTTACATTTTGGGGATTAAATATATTAAGAAAGCCAGAAAAAACAAAGATACAAAAAGCATTTATGGAT AAAATGTTTGCATCAATGATGCCAAGAGGAAGCAAAAAGTTAAAGCTTTCTAAAATGAACATGATGGGAATGGGATCTAA AATGATCAGAAAAGTAATGAAAAACAAAAATATATCTTCTCTTGAAGAATTAATACAATCAGCCATAGATTCAGGTATAA ATATAGTTGCATGCCAAATGTCAATGGATGTTATGGGTATAAAAGAAGAGGAATTAATAGATGGAGTAAATATAGGAGGA GTAGGATATTATTTAGGAGAAGCTGAGGATGCTAATGTAAATTTATTCATATAA
Upstream 100 bases:
>100_bases AAATTATCATGTTTCTAATAAAAAAGCAGAGCAATTGATAGAAATTTTGCTTAATGAATAATAGTACTAAGAAATTTCTA TTTAAATGGGAGGAATTATA
Downstream 100 bases:
>100_bases ATAAAATAAAAATCCTATGGAACATGTTCATAGGATTTTTATTTTATTTAGAAATCTAGATAAGAATCCCTTTTGGGGTT TAGTATTATCGATTTCATCA
Product: pyridine nucleotide-disulphide oxidoreductase family protein
Products: NA
Alternate protein names: CoA-disulfide reductase; CoADR [H]
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MNKKVLIIGGVAGGASAAARLRRLDDNAQIIMFERGEHISFANCGLPYYIGETIKERDNLLVQTPEAMMGRFNIDVRVNS EVISINTREKKVKVNSKEKGLYEETYDYIIMSPGATPIKPPIKGINSSKIFTLRNIPDTDRIKDYVDNKDVKSAVVVGGG YIGVEMAENLRERGINVVLVEAAPHILAPFDSDMVTFAEQELQDNGVGLILGDGVKSFEENNNKIKLSLQSGTELNADMI ILAIGVKPDTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIPLAGPANKQGRIAADNICELN SSYKGTQGTAIIKVFGLTGASTGNNERTLSKFNIPYEVVYTHSQSHASYYPGGTPISLKLIFDTKGKILGAQVFGYDGVD KRIDDIAIVIRFGGTIYDLEELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE NGKIEGAIEIPINQLRNRLSEIPKDNEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYKTYIMNKFIPEKINKMPEEKM KGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEGETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKAL IKKGKEKLQVDEKERKGKIKENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINIVACQMSMDVMGIKEEELIDGVNIGG VGYYLGEAEDANVNLFI
Sequences:
>Translated_817_residues MNKKVLIIGGVAGGASAAARLRRLDDNAQIIMFERGEHISFANCGLPYYIGETIKERDNLLVQTPEAMMGRFNIDVRVNS EVISINTREKKVKVNSKEKGLYEETYDYIIMSPGATPIKPPIKGINSSKIFTLRNIPDTDRIKDYVDNKDVKSAVVVGGG YIGVEMAENLRERGINVVLVEAAPHILAPFDSDMVTFAEQELQDNGVGLILGDGVKSFEENNNKIKLSLQSGTELNADMI ILAIGVKPDTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIPLAGPANKQGRIAADNICELN SSYKGTQGTAIIKVFGLTGASTGNNERTLSKFNIPYEVVYTHSQSHASYYPGGTPISLKLIFDTKGKILGAQVFGYDGVD KRIDDIAIVIRFGGTIYDLEELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE NGKIEGAIEIPINQLRNRLSEIPKDNEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYKTYIMNKFIPEKINKMPEEKM KGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEGETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKAL IKKGKEKLQVDEKERKGKIKENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINIVACQMSMDVMGIKEEELIDGVNIGG VGYYLGEAEDANVNLFI >Mature_817_residues MNKKVLIIGGVAGGASAAARLRRLDDNAQIIMFERGEHISFANCGLPYYIGETIKERDNLLVQTPEAMMGRFNIDVRVNS EVISINTREKKVKVNSKEKGLYEETYDYIIMSPGATPIKPPIKGINSSKIFTLRNIPDTDRIKDYVDNKDVKSAVVVGGG YIGVEMAENLRERGINVVLVEAAPHILAPFDSDMVTFAEQELQDNGVGLILGDGVKSFEENNNKIKLSLQSGTELNADMI ILAIGVKPDTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIPLAGPANKQGRIAADNICELN SSYKGTQGTAIIKVFGLTGASTGNNERTLSKFNIPYEVVYTHSQSHASYYPGGTPISLKLIFDTKGKILGAQVFGYDGVD KRIDDIAIVIRFGGTIYDLEELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE NGKIEGAIEIPINQLRNRLSEIPKDNEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYKTYIMNKFIPEKINKMPEEKM KGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEGETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKAL IKKGKEKLQVDEKERKGKIKENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINIVACQMSMDVMGIKEEELIDGVNIGG VGYYLGEAEDANVNLFI
Specific function: Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=318, Percent_Identity=29.559748427673, Blast_Score=130, Evalue=6e-30, Organism=Homo sapiens, GI65787454, Length=318, Percent_Identity=29.559748427673, Blast_Score=130, Evalue=7e-30, Organism=Homo sapiens, GI226437568, Length=318, Percent_Identity=29.559748427673, Blast_Score=129, Evalue=8e-30, Organism=Homo sapiens, GI50301238, Length=341, Percent_Identity=26.3929618768328, Blast_Score=77, Evalue=6e-14, Organism=Escherichia coli, GI1789065, Length=358, Percent_Identity=23.1843575418994, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1789765, Length=327, Percent_Identity=25.9938837920489, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI87082354, Length=355, Percent_Identity=24.7887323943662, Blast_Score=80, Evalue=7e-16, Organism=Escherichia coli, GI1788892, Length=292, Percent_Identity=23.2876712328767, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1789915, Length=338, Percent_Identity=26.6272189349112, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI87081717, Length=221, Percent_Identity=28.9592760180996, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17559934, Length=242, Percent_Identity=28.9256198347107, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24639257, Length=320, Percent_Identity=23.75, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI281359715, Length=320, Percent_Identity=23.75, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI281359713, Length=320, Percent_Identity=23.75, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24639250, Length=320, Percent_Identity=23.75, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI18543267, Length=320, Percent_Identity=23.75, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24639252, Length=320, Percent_Identity=23.75, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24585130, Length=220, Percent_Identity=28.6363636363636, Blast_Score=79, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017758 - InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.14 [H]
Molecular weight: Translated: 90086; Mature: 90086
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS50206 RHODANESE_3 ; PS01148 UPF0033
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKVLIIGGVAGGASAAARLRRLDDNAQIIMFERGEHISFANCGLPYYIGETIKERDNL CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCE LVQTPEAMMGRFNIDVRVNSEVISINTREKKVKVNSKEKGLYEETYDYIIMSPGATPIKP EEECCHHHHCEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCC PIKGINSSKIFTLRNIPDTDRIKDYVDNKDVKSAVVVGGGYIGVEMAENLRERGINVVLV CCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCEEEHHHHHHHHHCCCCEEEE EAAPHILAPFDSDMVTFAEQELQDNGVGLILGDGVKSFEENNNKIKLSLQSGTELNADMI ECCCCEECCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHCCCCEEEEEECCCCCCCCCEE ILAIGVKPDTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIP EEEEECCCCHHHHCCCCEEECCCCCEEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEE LAGPANKQGRIAADNICELNSSYKGTQGTAIIKVFGLTGASTGNNERTLSKFNIPYEVVY ECCCCCCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCEEEEE THSQSHASYYPGGTPISLKLIFDTKGKILGAQVFGYDGVDKRIDDIAIVIRFGGTIYDLE EECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCEEEEHH ELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE HCEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEE NGKIEGAIEIPINQLRNRLSEIPKDNEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYK CCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEECCCCEE TYIMNKFIPEKINKMPEEKMKGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEG EEEEHHCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHCCCC ETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKALIKKGKEKLQVDEKERKGKIK CEEEEEECCCCEEEEHHHHHHHCCCCEEEECCCCHHHHHHHHCCHHHCCCCCHHHCCCCC ENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD CCCCCEEEEEECCHHHHHHHHHHHCCCEECCCEEEEEEEEECHHHHCCCHHHHHHHHHHH KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINIVACQM HHHHHHCCCCCCEEEEEECCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEE SMDVMGIKEEELIDGVNIGGVGYYLGEAEDANVNLFI ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEC >Mature Secondary Structure MNKKVLIIGGVAGGASAAARLRRLDDNAQIIMFERGEHISFANCGLPYYIGETIKERDNL CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCE LVQTPEAMMGRFNIDVRVNSEVISINTREKKVKVNSKEKGLYEETYDYIIMSPGATPIKP EEECCHHHHCEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCC PIKGINSSKIFTLRNIPDTDRIKDYVDNKDVKSAVVVGGGYIGVEMAENLRERGINVVLV CCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCEEEHHHHHHHHHCCCCEEEE EAAPHILAPFDSDMVTFAEQELQDNGVGLILGDGVKSFEENNNKIKLSLQSGTELNADMI ECCCCEECCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHCCCCEEEEEECCCCCCCCCEE ILAIGVKPDTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIP EEEEECCCCHHHHCCCCEEECCCCCEEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEE LAGPANKQGRIAADNICELNSSYKGTQGTAIIKVFGLTGASTGNNERTLSKFNIPYEVVY ECCCCCCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCEEEEE THSQSHASYYPGGTPISLKLIFDTKGKILGAQVFGYDGVDKRIDDIAIVIRFGGTIYDLE EECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCEEEEHH ELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE HCEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEE NGKIEGAIEIPINQLRNRLSEIPKDNEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYK CCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEECCCCEE TYIMNKFIPEKINKMPEEKMKGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEG EEEEHHCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHCCCC ETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKALIKKGKEKLQVDEKERKGKIK CEEEEEECCCCEEEEHHHHHHHCCCCEEEECCCCHHHHHHHHCCHHHCCCCCHHHCCCCC ENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD CCCCCEEEEEECCHHHHHHHHHHHCCCEECCCEEEEEEEEECHHHHCCCHHHHHHHHHHH KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINIVACQM HHHHHHCCCCCCEEEEEECCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEE SMDVMGIKEEELIDGVNIGGVGYYLGEAEDANVNLFI ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA