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The map label for this gene is ydeE [H]

Identifier: 153936577

GI number: 153936577

Start: 852201

End: 853058

Strand: Direct

Name: ydeE [H]

Synonym: CLC_0835

Alternate gene names: 153936577

Gene position: 852201-853058 (Clockwise)

Preceding gene: 153935074

Following gene: 153935406

Centisome position: 22.66

GC content: 37.06

Gene sequence:

>858_bases
ATGGGATGGATTGAAGGAATCGGTGAAGCTATCAACTATATTGAGGAGAATATCACTGAAGAAATCCCAATAGAAAATAT
TGCAGAAAAAGCATTTGTGTCGACCTTCTATTTCCAAAAAGGCTTTGCAATGCTTTGTGATCTTACGGTTGGAGAGTACA
TCAGACAACGCAGGCTTACCCTTGCCGGCAGTGAGCTTGTTTCCACTGATGAAAAAATTATTGATATTGCGCTGAAATAT
GGCTACGCCTCACCGGATAGTTTTACAAAAGCTTTTACTCGATTTCATGGTGTCACACCTACTGCTGTTCGAAAAGATGG
AGCAATGATTAAATCCTTTGCTCCGTTGAAAATCAAATTTTCATTGGAAGGTGGTTATATTATGGATTACAAAATTGTTG
AAAAAGATTCGTTTACTGTCATGGGCGTATCAAAGGTGTTTAAATATGATAGTGCAACTACAAAAGTTCCAGAGTTTTGG
ACAGAGCATTATGAAACAGGAAAGGGAAAATATGTATGCGGAATGTATGGAGTAAACATAGACGAGAGCATGGGTTCAGA
TGAGTTTGAATATTTGATTGCAGACAATTATAATCCGTCTATGGAAATACCTAATGGTTTTGTTACAAAGATTATTCCTA
AATACACCTGGGCTGTTTTTGCTTGCAAGGGCGCAATGCCGAAATCTATGATAGATGTGAGCAGAAAAATCTTCTCAGAA
TGGCTACCTAATTGCAAGGATTATGAAATTGCAGCAGGTTACAATATTGAAATGTACACCAATACGGCTGATTATCCGCA
AGGTAATCAAGATGAAAACTACTACAGTGAAATTTGGATTCCTGTTAAGAAAAAATAA

Upstream 100 bases:

>100_bases
TTATCTAGTAATCTTTTAGACAAGACAAAACATAACACAAAAAGTCGGTAACAACCGCTTGAAAAGAGATAAGATATAGA
TACAGATAGGGGTGATGATT

Downstream 100 bases:

>100_bases
CTACGTAAAAGGTCATAATTTTTAAAAAAGGGGAGAGGAGCAATATGATTTTCATTATAATAGTACTAATAATTTTTTTG
CTCTTTTTACTCTCCTATGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MGWIEGIGEAINYIEENITEEIPIENIAEKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFSLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFW
TEHYETGKGKYVCGMYGVNIDESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK

Sequences:

>Translated_285_residues
MGWIEGIGEAINYIEENITEEIPIENIAEKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKY
GYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFSLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFW
TEHYETGKGKYVCGMYGVNIDESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK
>Mature_284_residues
GWIEGIGEAINYIEENITEEIPIENIAEKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLTLAGSELVSTDEKIIDIALKYG
YASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKFSLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFWT
EHYETGKGKYVCGMYGVNIDESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSEW
LPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=39.7959183673469, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790857, Length=292, Percent_Identity=22.2602739726027, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32462; Mature: 32331

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWIEGIGEAINYIEENITEEIPIENIAEKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLT
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LAGSELVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKF
HCCCHHHCCCHHHEEEHHCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCEECCCCEEEEE
SLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFWTEHYETGKGKYVCGMYGVNI
EECCCEEEEEEEEECCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
DESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK
HCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
GWIEGIGEAINYIEENITEEIPIENIAEKAFVSTFYFQKGFAMLCDLTVGEYIRQRRLT
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LAGSELVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKF
HCCCHHHCCCHHHEEEHHCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCEECCCCEEEEE
SLEGGYIMDYKIVEKDSFTVMGVSKVFKYDSATTKVPEFWTEHYETGKGKYVCGMYGVNI
EECCCEEEEEEEEECCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
DESMGSDEFEYLIADNYNPSMEIPNGFVTKIIPKYTWAVFACKGAMPKSMIDVSRKIFSE
HHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
WLPNCKDYEIAAGYNIEMYTNTADYPQGNQDENYYSEIWIPVKKK
HCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]