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The map label for this gene is ybbK [C]

Identifier: 153936563

GI number: 153936563

Start: 463872

End: 464867

Strand: Direct

Name: ybbK [C]

Synonym: CLC_0463

Alternate gene names: 153936563

Gene position: 463872-464867 (Clockwise)

Preceding gene: 153937348

Following gene: 153936962

Centisome position: 12.34

GC content: 27.91

Gene sequence:

>996_bases
ATGGCGATACTTGCAATTGTATTATTAGTTATTATATTAGTAACATTTTTGATGTCTATAAAAGTTGTAAATACAGGTTA
CGTCTCTATTGTAGAAAGGTTTGGTAAATATCATAGAACTTTAGAGCCAGGTTGGCATATAATTATGCCTTTTGCGGATT
TTGTAAGAAAAAAAATTTCTACAAAGCAACAAATAATAGATATAGATCCACAGAGTGTTATTACACAAGATAATGTAAAA
ATATCTATAGATAATGTTATATTTTACAAAATAATGAATTCTAAAGATGCAGTTTACAATATTGAAGACTATAAAGCAGG
TATAACATATTCTACTATAACAAATATGAGAAATATAGTAGGTAATATGACTTTAGATGAAGTTTTATCAGGAAGAGATA
AAATAAATTCAAAATTACTTGAACAAATAGATGAAATTACAGATGCCTATGGTATTAAAATTTTATCTGTAGAAATAAAA
AATATAGATCCACCAAGAGAAATACAAGAAGCTATGGAAAAACAAATGAGAGCAGAAAGAGATAAGAGAGCTGCTATACT
TCAAGCAGAAGGGGAAAAACAATCAGAAATAGCAAGAGCAGAAGGTGAAAAGCAAGCTAAAATATTACAATCAGAGGCAG
AGAAGGAAGCTAATATAAGAAGAGCGGAAGGTCTAAGAGAATCTCAATTATTAGAAGCAGAAGGTAAAGCTAGAGCTATA
GAACAAATAGCTAATGCAGAATCAGAAGCTATAAGAAAGGTTAATGCGTCTATAATAGAATCAGGCACAAATGAAGTAGT
TATTGCTCTAAAACAAGTAGATGCGCTAAAAGAAATGGCTAAAAATCCAGCTAATAAATTAATATTACCAAATGAAACAT
TATCTTCATTAGGTAGTATTGCTGCTATAGGAGATTTGTTAAATAAAGATAGTAAAAAAGATAATAATATAATAAATAAA
ATGACAAATAAGATAGTAAATAAAGATAATAAATAA

Upstream 100 bases:

>100_bases
TTACAAATAGTGGCAATCATATAAAAAAGGGAGACAAGGTAAAGATAAATTCAGTAAAAGGTAACAAAATTTTTGTTAAA
AAGGTAGAGGAGGAATAAGC

Downstream 100 bases:

>100_bases
GATAACATCCATAGATTTGATTTACACAAATCTATGGATGTTTTTTTATCTAACAATTATGAGATAAAATTAGAGGAAAT
ATTATGGGATATCCCATATA

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MAILAIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKISTKQQIIDIDPQSVITQDNVK
ISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIVGNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIK
NIDPPREIQEAMEKQMRAERDKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSIAAIGDLLNKDSKKDNNIINK
MTNKIVNKDNK

Sequences:

>Translated_331_residues
MAILAIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKISTKQQIIDIDPQSVITQDNVK
ISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIVGNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIK
NIDPPREIQEAMEKQMRAERDKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSIAAIGDLLNKDSKKDNNIINK
MTNKIVNKDNK
>Mature_330_residues
AILAIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKISTKQQIIDIDPQSVITQDNVKI
SIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIVGNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIKN
IDPPREIQEAMEKQMRAERDKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAIE
QIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSIAAIGDLLNKDSKKDNNIINKM
TNKIVNKDNK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=262, Percent_Identity=38.1679389312977, Blast_Score=172, Evalue=4e-43,
Organism=Homo sapiens, GI221316744, Length=222, Percent_Identity=29.2792792792793, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI21686995, Length=222, Percent_Identity=29.2792792792793, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI38016911, Length=221, Percent_Identity=33.4841628959276, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI7657615, Length=187, Percent_Identity=24.5989304812834, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1786697, Length=314, Percent_Identity=40.1273885350318, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI1790617, Length=324, Percent_Identity=24.3827160493827, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790616, Length=200, Percent_Identity=25.5, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32564147, Length=276, Percent_Identity=35.5072463768116, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17569499, Length=206, Percent_Identity=33.495145631068, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17569493, Length=229, Percent_Identity=29.2576419213974, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI193209764, Length=222, Percent_Identity=27.9279279279279, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17570459, Length=205, Percent_Identity=32.1951219512195, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71987612, Length=235, Percent_Identity=30.2127659574468, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25153583, Length=235, Percent_Identity=30.2127659574468, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71987621, Length=235, Percent_Identity=30.2127659574468, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32566490, Length=215, Percent_Identity=29.7674418604651, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71989955, Length=181, Percent_Identity=32.5966850828729, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71989948, Length=181, Percent_Identity=32.5966850828729, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17569497, Length=193, Percent_Identity=25.9067357512953, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193210507, Length=200, Percent_Identity=31, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17570161, Length=200, Percent_Identity=31, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71989963, Length=125, Percent_Identity=28.8, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45550506, Length=274, Percent_Identity=36.8613138686131, Blast_Score=174, Evalue=8e-44,
Organism=Drosophila melanogaster, GI24657857, Length=209, Percent_Identity=33.0143540669856, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI281365664, Length=209, Percent_Identity=33.0143540669856, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI62484274, Length=209, Percent_Identity=33.0143540669856, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI62484448, Length=209, Percent_Identity=33.0143540669856, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21356845, Length=203, Percent_Identity=25.1231527093596, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI45556022, Length=209, Percent_Identity=31.5789473684211, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI281361633, Length=195, Percent_Identity=28.2051282051282, Blast_Score=95, Evalue=7e-20,
Organism=Drosophila melanogaster, GI281361631, Length=195, Percent_Identity=28.2051282051282, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI18860517, Length=199, Percent_Identity=32.6633165829146, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28573263, Length=205, Percent_Identity=24.8780487804878, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281361635, Length=131, Percent_Identity=28.2442748091603, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 37048; Mature: 36917

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILAIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKIS
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHC
TKQQIIDIDPQSVITQDNVKISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIV
CHHHEEECCCHHHEECCCCEEEECCEEEEEEECCCCCEEEHHHHHCCCHHHHHHHHHHHH
GNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIKNIDPPREIQEAMEKQMRAER
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHH
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSI
HHHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
AAIGDLLNKDSKKDNNIINKMTNKIVNKDNK
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AILAIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKIS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHC
TKQQIIDIDPQSVITQDNVKISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIV
CHHHEEECCCHHHEECCCCEEEECCEEEEEEECCCCCEEEHHHHHCCCHHHHHHHHHHHH
GNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIKNIDPPREIQEAMEKQMRAER
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHH
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSI
HHHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
AAIGDLLNKDSKKDNNIINKMTNKIVNKDNK
HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]