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The map label for this gene is aldR [H]

Identifier: 153936523

GI number: 153936523

Start: 2020640

End: 2021008

Strand: Reverse

Name: aldR [H]

Synonym: CLC_1906

Alternate gene names: 153936523

Gene position: 2021008-2020640 (Counterclockwise)

Preceding gene: 153937243

Following gene: 153935720

Centisome position: 53.74

GC content: 37.94

Gene sequence:

>369_bases
ATGAAAATTATTGAAACAACAAAAGCTCCCGGAGCTATTGGACCATACTCTCAGGGATATGAAGTAAACGGGATTGTTTA
TACTTCCGGCCAGATTCCGGTTAATCCAGAAAATGGAGAAATAGCAGAGAAAATTGCAGAACAAGCAAAACAAAGCTGTG
AAAATGTAGGTGCCATTCTAGAAGCGGCAGGCACCAGATTTGAAAAAGTATTTAAAACCACCTGCTTTTTAGCGGATATG
GAGGATTTTGCAGATTTTAATGATGTTTATGCAAAATATTTCGTATCAAATCCAGCTCGCAGTTGTATAGCAGTAAAGAC
CCTTCCGAAGGGTGTATTATGTGAAATTGAAGCAATCGCTGTAAAATAA

Upstream 100 bases:

>100_bases
TGTTAAAGGGAGAGATAAATAAAGAGGGGGAGATAAATAAAATAGAAATTAGCTGTTAAACAGAGAAAAAAATAAAATAA
AAAGAAAGGAAGAAGAATAC

Downstream 100 bases:

>100_bases
GGAGGAAATAATATGAAAATTACTGTAATTGGAAGTCATCTTTGCCCAGATACCTTAGCTGCATTAAACAAGCTTTCTGC
TGTTGGAGCAGATATTGATT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKIIETTKAPGAIGPYSQGYEVNGIVYTSGQIPVNPENGEIAEKIAEQAKQSCENVGAILEAAGTRFEKVFKTTCFLADM
EDFADFNDVYAKYFVSNPARSCIAVKTLPKGVLCEIEAIAVK

Sequences:

>Translated_122_residues
MKIIETTKAPGAIGPYSQGYEVNGIVYTSGQIPVNPENGEIAEKIAEQAKQSCENVGAILEAAGTRFEKVFKTTCFLADM
EDFADFNDVYAKYFVSNPARSCIAVKTLPKGVLCEIEAIAVK
>Mature_122_residues
MKIIETTKAPGAIGPYSQGYEVNGIVYTSGQIPVNPENGEIAEKIAEQAKQSCENVGAILEAAGTRFEKVFKTTCFLADM
EDFADFNDVYAKYFVSNPARSCIAVKTLPKGVLCEIEAIAVK

Specific function: Implicated in the regulation of isoleucine biosynthesis [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=50.4065040650407, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=52, Blast_Score=130, Evalue=2e-32,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=51.2, Blast_Score=128, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI25148896, Length=121, Percent_Identity=46.2809917355372, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=46.2809917355372, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=46.2809917355372, Blast_Score=116, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=45, Blast_Score=110, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=49.5049504950495, Blast_Score=105, Evalue=1e-24,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=38.5245901639344, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13187; Mature: 13187

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIETTKAPGAIGPYSQGYEVNGIVYTSGQIPVNPENGEIAEKIAEQAKQSCENVGAIL
CCCCCCCCCCCCCCCCCCCEEECEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EAAGTRFEKVFKTTCFLADMEDFADFNDVYAKYFVSNPARSCIAVKTLPKGVLCEIEAIA
HHHCHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHCCCCHHEEEEECCCCCCEEEEEEEE
VK
CC
>Mature Secondary Structure
MKIIETTKAPGAIGPYSQGYEVNGIVYTSGQIPVNPENGEIAEKIAEQAKQSCENVGAIL
CCCCCCCCCCCCCCCCCCCEEECEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EAAGTRFEKVFKTTCFLADMEDFADFNDVYAKYFVSNPARSCIAVKTLPKGVLCEIEAIA
HHHCHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHCCCCHHEEEEECCCCCCEEEEEEEE
VK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9335274; 11337471 [H]