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The map label for this gene is lrpC [H]

Identifier: 153936497

GI number: 153936497

Start: 928806

End: 929174

Strand: Direct

Name: lrpC [H]

Synonym: CLC_0902

Alternate gene names: 153936497

Gene position: 928806-929174 (Clockwise)

Preceding gene: 153937451

Following gene: 153935507

Centisome position: 24.7

GC content: 25.47

Gene sequence:

>369_bases
TTGATACTTCTTTCACCACCATCTGTTACTGAAAGAGTAAGAAGATTGGAAGATGATGGGATTATTGAAAGATATACAAT
TAAAATAAATAAAAAGAAACTTGGATTGTCTATTAATTGTATGATCAAGGTAACTATGAGAAATGGACAGTATGAAAAAT
TCAAGATATTCATTAAGGAGTATAAAAGAAGTGAATGGTGTTATAGAATCGCTGGGGATGGATGCTTTTTAGTTAAATTA
TTAGTTAAATCTTTAAATGATATAGAAGAATTTATAAATGATATATCTTCATATGCAATAACAGAAACTATTATAGCATT
TTCAGAAGTAACAATAAATAATAGCATTAATAAATTCTTAGAAGAATAA

Upstream 100 bases:

>100_bases
AAGCAATTTGAAATTGATATGCAAATCTGTGTGCCTAATAAGGATAAGGAAGATGTGATAAATAAGGTATTAGTAGTATT
AGAAAGTATCACTGTTAATA

Downstream 100 bases:

>100_bases
AAATATGGCATAAGACAAGATTATATATTTAAGTGCACAATAAAATATAAGGAGTAACTTAATTGTTCTATATTTAGTAA
AAAATTAATACATAATATTA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MILLSPPSVTERVRRLEDDGIIERYTIKINKKKLGLSINCMIKVTMRNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLVKL
LVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFLEE

Sequences:

>Translated_122_residues
MILLSPPSVTERVRRLEDDGIIERYTIKINKKKLGLSINCMIKVTMRNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLVKL
LVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFLEE
>Mature_122_residues
MILLSPPSVTERVRRLEDDGIIERYTIKINKKKLGLSINCMIKVTMRNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLVKL
LVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFLEE

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 14250; Mature: 14250

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLSPPSVTERVRRLEDDGIIERYTIKINKKKLGLSINCMIKVTMRNGQYEKFKIFIKE
CEEECCCCHHHHHHHCCCCCCEEEEEEEEECCEECEEEEEEEEEEECCCCCHHHHHHHHH
YKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFL
HCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHH
EE
CC
>Mature Secondary Structure
MILLSPPSVTERVRRLEDDGIIERYTIKINKKKLGLSINCMIKVTMRNGQYEKFKIFIKE
CEEECCCCHHHHHHHCCCCCCEEEEEEEEECCEECEEEEEEEEEEECCCCCHHHHHHHHH
YKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFINDISSYAITETIIAFSEVTINNSINKFL
HCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHH
EE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]