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The map label for this gene is cssS [H]

Identifier: 153936434

GI number: 153936434

Start: 340941

End: 342326

Strand: Direct

Name: cssS [H]

Synonym: CLC_0355

Alternate gene names: 153936434

Gene position: 340941-342326 (Clockwise)

Preceding gene: 153935658

Following gene: 153936733

Centisome position: 9.07

GC content: 25.18

Gene sequence:

>1386_bases
ATGAAGAGATTAAGATTTAAATCATTAACAATGAGGATATGGACAACATTCACTGCTATAATTTTAATAATAATATGTAG
TATTTCATTTTTATATTTAGTTGCCTTTAAGAGAATTAGTGAAAATTCAAGGTTAGAGGATTTAAAAGTCGCTCATGATG
TTTTATTAAACAGCAATAATTTTAATGAACAAAATAGATTTGATGAATTAAAAAATCTTAAGGGAAGTGATCATTTTATT
GTAAAGATAGATGGAAATGATAAATATAAAATTATAGATATAGGTAAAAGAAAAGAGGAACCACCACCAATAGAAAAGAA
GAATCCACCTCCAGGACCTGCTAGTGATGGAATAAAAATGTGGATGGCTAGTTATATTATAGGTAATAATATTCAGCAAA
AGCAATTTAAAGAATATCATAACAACATGAAATTTATTTTTATAATAAGTTCAATTAAAAATACAGGAGGGGAAAAACTT
TATTTAATATCATATATACCCGAAATACAAGATAATGTATTACTATATACAGTAATAATTATAGGTATTATATTTATTGG
TATAGGATTTTTTACTGCTAAATTAGTTGTAAATTATATTTCAAAGCCTTTAAGAGAGCTTGAGGATTATACTGTAAAAA
TAGCTCATAAGGATTGGAGGGAGCCTGTTAAAATTAAAAATGATGATGAGATAGGTAGATTGGTAGATTCAATGAATCGT
ATGCAAAAAGAATTAAAAAAGATTGATGAAGAAGAAAAAATGTTTCTACAAAGCATATCTCATGATTTAAAGACTCCAGT
AATGGTAATTATGAGCCATGCTCAAGCTATTATTGATGGTATGTATATAGAATCAGTTGAAGAAACTGCTGAGATAATAA
AAGATGAGGCAGCTATTCTTGAGAAAAAAATTAAACAATTATTGTATTTAAATACTCTTGCCTATACTTTAGAAAATGAT
AGTGAAAATATAGGATTTGAGTTACATAATTTATTATTTAATATTATAAGTAGATTTGAGATAGTTAATAGTAAAATTCA
ATGGAATTTAGATATTGATAAGGTTGTTATAAAAGGAAATGCTGAAAAAATACAAGTAGCTATTGAAAATATATTAGATA
ATGGACTTAGGTATGCAGAAAGGGAAATTGCCATAACTCTTAAAAAAGAAAATTCTGTTGCAGTCTTAGAAATTTATAAT
GATGGACCTAATATTGATAAAAATAATATAGAGCATATTTTTGAAAATTTATATAAAGATAGAACTGGAAATTTTGGACT
AGGTTTAGCTATTTCTAAAAAAATTATAGATTTTTATAATGGAGAAATAAAGGCAGTAAATAGAGATAATGGGGTAAGTT
TTATAATTAAATATCCTATAGATTAA

Upstream 100 bases:

>100_bases
ATAGAGTTATTGATGATACAATTAGGAGATTGCGCAAAAAGATGGATAAGTTAGATCTTGAAACTGTATATGGATATGGT
TATAAATTGGTGGTTAAATG

Downstream 100 bases:

>100_bases
TAATTGGCCTTCGAAAAAGTAAAAGTAATTATTATTTACACTTTCCAATAAATTTTAATAATTAAGTTTAGAGGGGGTCT
CAAAATAAAAATAGCCTTAA

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKRLRFKSLTMRIWTTFTAIILIIICSISFLYLVAFKRISENSRLEDLKVAHDVLLNSNNFNEQNRFDELKNLKGSDHFI
VKIDGNDKYKIIDIGKRKEEPPPIEKKNPPPGPASDGIKMWMASYIIGNNIQQKQFKEYHNNMKFIFIISSIKNTGGEKL
YLISYIPEIQDNVLLYTVIIIGIIFIGIGFFTAKLVVNYISKPLRELEDYTVKIAHKDWREPVKIKNDDEIGRLVDSMNR
MQKELKKIDEEEKMFLQSISHDLKTPVMVIMSHAQAIIDGMYIESVEETAEIIKDEAAILEKKIKQLLYLNTLAYTLEND
SENIGFELHNLLFNIISRFEIVNSKIQWNLDIDKVVIKGNAEKIQVAIENILDNGLRYAEREIAITLKKENSVAVLEIYN
DGPNIDKNNIEHIFENLYKDRTGNFGLGLAISKKIIDFYNGEIKAVNRDNGVSFIIKYPID

Sequences:

>Translated_461_residues
MKRLRFKSLTMRIWTTFTAIILIIICSISFLYLVAFKRISENSRLEDLKVAHDVLLNSNNFNEQNRFDELKNLKGSDHFI
VKIDGNDKYKIIDIGKRKEEPPPIEKKNPPPGPASDGIKMWMASYIIGNNIQQKQFKEYHNNMKFIFIISSIKNTGGEKL
YLISYIPEIQDNVLLYTVIIIGIIFIGIGFFTAKLVVNYISKPLRELEDYTVKIAHKDWREPVKIKNDDEIGRLVDSMNR
MQKELKKIDEEEKMFLQSISHDLKTPVMVIMSHAQAIIDGMYIESVEETAEIIKDEAAILEKKIKQLLYLNTLAYTLEND
SENIGFELHNLLFNIISRFEIVNSKIQWNLDIDKVVIKGNAEKIQVAIENILDNGLRYAEREIAITLKKENSVAVLEIYN
DGPNIDKNNIEHIFENLYKDRTGNFGLGLAISKKIIDFYNGEIKAVNRDNGVSFIIKYPID
>Mature_461_residues
MKRLRFKSLTMRIWTTFTAIILIIICSISFLYLVAFKRISENSRLEDLKVAHDVLLNSNNFNEQNRFDELKNLKGSDHFI
VKIDGNDKYKIIDIGKRKEEPPPIEKKNPPPGPASDGIKMWMASYIIGNNIQQKQFKEYHNNMKFIFIISSIKNTGGEKL
YLISYIPEIQDNVLLYTVIIIGIIFIGIGFFTAKLVVNYISKPLRELEDYTVKIAHKDWREPVKIKNDDEIGRLVDSMNR
MQKELKKIDEEEKMFLQSISHDLKTPVMVIMSHAQAIIDGMYIESVEETAEIIKDEAAILEKKIKQLLYLNTLAYTLEND
SENIGFELHNLLFNIISRFEIVNSKIQWNLDIDKVVIKGNAEKIQVAIENILDNGLRYAEREIAITLKKENSVAVLEIYN
DGPNIDKNNIEHIFENLYKDRTGNFGLGLAISKKIIDFYNGEIKAVNRDNGVSFIIKYPID

Specific function: Member of the two-component regulatory system CssS/CssR required to control the cellular response to secretion stress. Required for the transcription of htrA. Could detect misfolded proteins at the membrane-cell wall interface and then activate CssR by ph

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788393, Length=273, Percent_Identity=27.1062271062271, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789808, Length=290, Percent_Identity=24.1379310344828, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790551, Length=289, Percent_Identity=21.4532871972318, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790346, Length=269, Percent_Identity=26.3940520446097, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081816, Length=341, Percent_Identity=21.4076246334311, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790861, Length=280, Percent_Identity=22.8571428571429, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786912, Length=238, Percent_Identity=24.3697478991597, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787374, Length=282, Percent_Identity=23.758865248227, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1786783, Length=306, Percent_Identity=21.8954248366013, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 53259; Mature: 53259

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLRFKSLTMRIWTTFTAIILIIICSISFLYLVAFKRISENSRLEDLKVAHDVLLNSNN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
FNEQNRFDELKNLKGSDHFIVKIDGNDKYKIIDIGKRKEEPPPIEKKNPPPGPASDGIKM
CCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
WMASYIIGNNIQQKQFKEYHNNMKFIFIISSIKNTGGEKLYLISYIPEIQDNVLLYTVII
HHHHHHHCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHH
IGIIFIGIGFFTAKLVVNYISKPLRELEDYTVKIAHKDWREPVKIKNDDEIGRLVDSMNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
MQKELKKIDEEEKMFLQSISHDLKTPVMVIMSHAQAIIDGMYIESVEETAEIIKDEAAIL
HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKKIKQLLYLNTLAYTLENDSENIGFELHNLLFNIISRFEIVNSKIQWNLDIDKVVIKGN
HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC
AEKIQVAIENILDNGLRYAEREIAITLKKENSVAVLEIYNDGPNIDKNNIEHIFENLYKD
HHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHC
RTGNFGLGLAISKKIIDFYNGEIKAVNRDNGVSFIIKYPID
CCCCCCEEHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCC
>Mature Secondary Structure
MKRLRFKSLTMRIWTTFTAIILIIICSISFLYLVAFKRISENSRLEDLKVAHDVLLNSNN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
FNEQNRFDELKNLKGSDHFIVKIDGNDKYKIIDIGKRKEEPPPIEKKNPPPGPASDGIKM
CCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
WMASYIIGNNIQQKQFKEYHNNMKFIFIISSIKNTGGEKLYLISYIPEIQDNVLLYTVII
HHHHHHHCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHH
IGIIFIGIGFFTAKLVVNYISKPLRELEDYTVKIAHKDWREPVKIKNDDEIGRLVDSMNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
MQKELKKIDEEEKMFLQSISHDLKTPVMVIMSHAQAIIDGMYIESVEETAEIIKDEAAIL
HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKKIKQLLYLNTLAYTLENDSENIGFELHNLLFNIISRFEIVNSKIQWNLDIDKVVIKGN
HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC
AEKIQVAIENILDNGLRYAEREIAITLKKENSVAVLEIYNDGPNIDKNNIEHIFENLYKD
HHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHC
RTGNFGLGLAISKKIIDFYNGEIKAVNRDNGVSFIIKYPID
CCCCCCEEHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9353931; 9639930; 9384377; 11555295 [H]