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The map label for this gene is ypeB

Identifier: 153936395

GI number: 153936395

Start: 158720

End: 160090

Strand: Direct

Name: ypeB

Synonym: CLC_0176

Alternate gene names: NA

Gene position: 158720-160090 (Clockwise)

Preceding gene: 153935571

Following gene: 153937112

Centisome position: 4.22

GC content: 26.26

Gene sequence:

>1371_bases
ATGAAAAAAAGTACTAGAAGGATAGTATATACTTTAATTGTGACATTGATAGTTGTTTTTTCAAGTACCTTTGCTATTTT
AATGACTTTAGAAAGAAATGATTATAGAAATTATCTTCAAGGTGAATATAGTAAAAGCTTACATGAATTAATAACTTCTG
TACAAAATATAAGGGTTAATTTATCTAAAGCATCTATTATAGGTTCAAGAGACCAGGAAATAGTTACATTTGAAGAAATA
TTTAAATATTCATCCATGGCTAATGATAAATTACATTCATTACCTATAGATCAAAATACAATAGCAAATACAAGTAAATT
TTTATCCCAAGTGGGGGATTTTTCTAATAGCTTAGGAAAATCAATAGTTAAAAATAATAATTTATCAAAAAAAGATTATG
AAAATATAGAAAGATTAAAAAAGGAATCTCTTCAATTAGAAAATCAACTAAATAACGTTGTTACGGATATTAATGAAGGT
AGAGTTAAATGGGGAGACATAAGAAAGAAAGTTGGTGGAGTATTAGCTAAAGAGAATCCAAATTCAGTTAAAGGCCAATT
TAATAATATGCAAAAACAGGTTATGCAGTATCCGGCCTTAATTTACGATGGACCTTTTTCAGATAATACTTTAAAAATAA
CTCCTAAAGTAAATAGTGAAAAAAATATTTCTGAAAGTCAGGCCCAAAAAATAGCAGAAAATATAATTGGTAAGGATAAA
ATTAAAGCTATTAAATTAGATACAAATGAAGGGAAAACAAATATAGGAACCTATAGATTTATAGCAGATATTAAAGGTAG
GGACAATAAAAATGGTAATGTTACATGCGAAATTAGTAAGCATGGTGGGAAACTAGTATATTTAATAGATTCTAGGAGTA
TAGGCCAACCTAAAATAGATAGTAAAAAAGCAAAAAGTATAGGAAACAATTATTTGAAAAAGCTTAAAATTTCTAATATG
GTGCCTACATATACTTTAAATTATGAAAATGTAGCTGTAATAAATTATGTATATAAGCAGGATGATGTAATAGTGTATCC
AGATCAAATAAAATTGAAAATAGCTTTAGATACTGGAGAAATAATAGGTGTAGACTCACAGAAATATTTAATAGCTCATC
ATGATAGAGATATCAATAAAAATATAAAGGTCAGCCAAAAGGAAGCACAAAAGAAAGTCGGGAAAAATTTAAATATTACT
AATATTAGATTAAGCATTATTCCAACAGAGGCTAATACAGAAGTTTTATGTTATGAATTTTCTGGAACTTATAAAAATGA
TAAATTTAAAATGTTTATAAATGCTAATACAGGATATGAAGAGCGAATATTACAAATACTAGATACTCCAAATGGTGAAT
TAACAATATAA

Upstream 100 bases:

>100_bases
TAAATTATAGTTATATATTTAAATAAATTTTGTTAATTAATGAATAACCTAAACCATAAATACAGATAATAAGGTAAGAA
ATGTTGGGAGGTTATGATAT

Downstream 100 bases:

>100_bases
TATAATTTAAAATAAAGAGTGAATAATAGTGTATTCACTCTTTATTTGTATTATAATAATAGTTATTGAAAAGTAAGTAA
TATGAAAAGAAGGGTGAGTT

Product: germination protein YpeB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MKKSTRRIVYTLIVTLIVVFSSTFAILMTLERNDYRNYLQGEYSKSLHELITSVQNIRVNLSKASIIGSRDQEIVTFEEI
FKYSSMANDKLHSLPIDQNTIANTSKFLSQVGDFSNSLGKSIVKNNNLSKKDYENIERLKKESLQLENQLNNVVTDINEG
RVKWGDIRKKVGGVLAKENPNSVKGQFNNMQKQVMQYPALIYDGPFSDNTLKITPKVNSEKNISESQAQKIAENIIGKDK
IKAIKLDTNEGKTNIGTYRFIADIKGRDNKNGNVTCEISKHGGKLVYLIDSRSIGQPKIDSKKAKSIGNNYLKKLKISNM
VPTYTLNYENVAVINYVYKQDDVIVYPDQIKLKIALDTGEIIGVDSQKYLIAHHDRDINKNIKVSQKEAQKKVGKNLNIT
NIRLSIIPTEANTEVLCYEFSGTYKNDKFKMFINANTGYEERILQILDTPNGELTI

Sequences:

>Translated_456_residues
MKKSTRRIVYTLIVTLIVVFSSTFAILMTLERNDYRNYLQGEYSKSLHELITSVQNIRVNLSKASIIGSRDQEIVTFEEI
FKYSSMANDKLHSLPIDQNTIANTSKFLSQVGDFSNSLGKSIVKNNNLSKKDYENIERLKKESLQLENQLNNVVTDINEG
RVKWGDIRKKVGGVLAKENPNSVKGQFNNMQKQVMQYPALIYDGPFSDNTLKITPKVNSEKNISESQAQKIAENIIGKDK
IKAIKLDTNEGKTNIGTYRFIADIKGRDNKNGNVTCEISKHGGKLVYLIDSRSIGQPKIDSKKAKSIGNNYLKKLKISNM
VPTYTLNYENVAVINYVYKQDDVIVYPDQIKLKIALDTGEIIGVDSQKYLIAHHDRDINKNIKVSQKEAQKKVGKNLNIT
NIRLSIIPTEANTEVLCYEFSGTYKNDKFKMFINANTGYEERILQILDTPNGELTI
>Mature_456_residues
MKKSTRRIVYTLIVTLIVVFSSTFAILMTLERNDYRNYLQGEYSKSLHELITSVQNIRVNLSKASIIGSRDQEIVTFEEI
FKYSSMANDKLHSLPIDQNTIANTSKFLSQVGDFSNSLGKSIVKNNNLSKKDYENIERLKKESLQLENQLNNVVTDINEG
RVKWGDIRKKVGGVLAKENPNSVKGQFNNMQKQVMQYPALIYDGPFSDNTLKITPKVNSEKNISESQAQKIAENIIGKDK
IKAIKLDTNEGKTNIGTYRFIADIKGRDNKNGNVTCEISKHGGKLVYLIDSRSIGQPKIDSKKAKSIGNNYLKKLKISNM
VPTYTLNYENVAVINYVYKQDDVIVYPDQIKLKIALDTGEIIGVDSQKYLIAHHDRDINKNIKVSQKEAQKKVGKNLNIT
NIRLSIIPTEANTEVLCYEFSGTYKNDKFKMFINANTGYEERILQILDTPNGELTI

Specific function: Required for spore cortex hydrolysis during germination. Appears to be required for either expression, localization, activation or function of sleB [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ypeB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005075
- InterPro:   IPR014239 [H]

Pfam domain/function: PF03413 PepSY [H]

EC number: NA

Molecular weight: Translated: 51673; Mature: 51673

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSTRRIVYTLIVTLIVVFSSTFAILMTLERNDYRNYLQGEYSKSLHELITSVQNIRVN
CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHEEEE
LSKASIIGSRDQEIVTFEEIFKYSSMANDKLHSLPIDQNTIANTSKFLSQVGDFSNSLGK
EEHHEEECCCCCCEEEHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SIVKNNNLSKKDYENIERLKKESLQLENQLNNVVTDINEGRVKWGDIRKKVGGVLAKENP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCEEECCCC
NSVKGQFNNMQKQVMQYPALIYDGPFSDNTLKITPKVNSEKNISESQAQKIAENIIGKDK
CCCCHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
IKAIKLDTNEGKTNIGTYRFIADIKGRDNKNGNVTCEISKHGGKLVYLIDSRSIGQPKID
EEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCC
SKKAKSIGNNYLKKLKISNMVPTYTLNYENVAVINYVYKQDDVIVYPDQIKLKIALDTGE
CHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEECCCEEEECCCEEEEEEEECCC
IIGVDSQKYLIAHHDRDINKNIKVSQKEAQKKVGKNLNITNIRLSIIPTEANTEVLCYEF
EEECCCCEEEEEECCCCCCCCCEECHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEE
SGTYKNDKFKMFINANTGYEERILQILDTPNGELTI
CCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCEEC
>Mature Secondary Structure
MKKSTRRIVYTLIVTLIVVFSSTFAILMTLERNDYRNYLQGEYSKSLHELITSVQNIRVN
CCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHEEEE
LSKASIIGSRDQEIVTFEEIFKYSSMANDKLHSLPIDQNTIANTSKFLSQVGDFSNSLGK
EEHHEEECCCCCCEEEHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SIVKNNNLSKKDYENIERLKKESLQLENQLNNVVTDINEGRVKWGDIRKKVGGVLAKENP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHCCEEECCCC
NSVKGQFNNMQKQVMQYPALIYDGPFSDNTLKITPKVNSEKNISESQAQKIAENIIGKDK
CCCCHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
IKAIKLDTNEGKTNIGTYRFIADIKGRDNKNGNVTCEISKHGGKLVYLIDSRSIGQPKID
EEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCC
SKKAKSIGNNYLKKLKISNMVPTYTLNYENVAVINYVYKQDDVIVYPDQIKLKIALDTGE
CHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEEECCCEEEECCCEEEEEEEECCC
IIGVDSQKYLIAHHDRDINKNIKVSQKEAQKKVGKNLNITNIRLSIIPTEANTEVLCYEF
EEECCCCEEEEEECCCCCCCCCEECHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEE
SGTYKNDKFKMFINANTGYEERILQILDTPNGELTI
CCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10484179; 11058132 [H]