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The map label for this gene is ykoC [H]

Identifier: 153936358

GI number: 153936358

Start: 2032355

End: 2033080

Strand: Reverse

Name: ykoC [H]

Synonym: CLC_1917

Alternate gene names: 153936358

Gene position: 2033080-2032355 (Counterclockwise)

Preceding gene: 153937393

Following gene: 153935854

Centisome position: 54.06

GC content: 26.17

Gene sequence:

>726_bases
ATGAATCCTTTTTTAAAATTACTTATTCTTATAACAATAACTATTATAGGATCTTTAGATTTTAAGCCTTATGCTTCAAG
TATTTTGATTATTAGTGGAATTATAATTGCCTCTATTTTTAGCAGCTTAGATACATTAGAAATATTAAATTCTGTTAAAA
GATTTATATTAATGTCAATAACTTTTATGTGTGTTATTTTAGCTCTCAGATATATTAGTGGAGAACCTCTTAAGGTTGTT
GCTGTATTAGGATTAGGGTTTAGAATAATACTAATAAGTATTTATACTTCTATTTTTGTAAAAACAACGGATCCTACAGA
GTTTGTTATATCCTTAATAAAATATTTTAAGATGCCACCTAAAGTGGGGTATGCTTTTTTAACTGCCTATAGATTTCTTC
CTACTTTTAAAGAGGAACTTCAAACTATAAAATATGCTCACAAAGTAAGAGGAATTGTAGAAAGTAAAAATCCTTTTATT
AAGGTATGGAATTCAAAAAGATATATACTTCCCATGATGGCAAATGCGGTTAGAAAGGGTATAAGAATATCCATGGCTAT
GGAAACTCGTGCCTTTGATAAATATAAAACTAGAACATATTATAGAGAGCTTCATATGCCTATAAATGAAATTATTATGA
CAGCCATATATATTTTATATATTATTTCTGTTGCAGTTATACTTTATTTAAATAATCTTGTTACTTTTTCTGTTAAGTAT
ATATAA

Upstream 100 bases:

>100_bases
GAGAAGTAAAATATGAAGGTTCACCGAAAAATATGAAAGAAAATATTTTTACTTAAAAATAAGGAGAAAAAATGACCAAA
AAAATTATTTTATAGATAAT

Downstream 100 bases:

>100_bases
TAATAAAACATTGGAGGGATAAAATATGCCGTTTAAACATGAAAAAATTACTTATGGATTTCCACAGGACCCATATGATA
ATAGTATTATTAAAGAATTA

Product: putative ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKRFILMSITFMCVILALRYISGEPLKVV
AVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAHKVRGIVESKNPFI
KVWNSKRYILPMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMPINEIIMTAIYILYIISVAVILYLNNLVTFSVKY
I

Sequences:

>Translated_241_residues
MNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKRFILMSITFMCVILALRYISGEPLKVV
AVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAHKVRGIVESKNPFI
KVWNSKRYILPMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMPINEIIMTAIYILYIISVAVILYLNNLVTFSVKY
I
>Mature_241_residues
MNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKRFILMSITFMCVILALRYISGEPLKVV
AVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPPKVGYAFLTAYRFLPTFKEELQTIKYAHKVRGIVESKNPFI
KVWNSKRYILPMMANAVRKGIRISMAMETRAFDKYKTRTYYRELHMPINEIIMTAIYILYIISVAVILYLNNLVTFSVKY
I

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 27716; Mature: 27716

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKRFILMSI
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFMCVILALRYISGEPLKVVAVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPP
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCC
KVGYAFLTAYRFLPTFKEELQTIKYAHKVRGIVESKNPFIKVWNSKRYILPMMANAVRKG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCC
IRISMAMETRAFDKYKTRTYYRELHMPINEIIMTAIYILYIISVAVILYLNNLVTFSVKY
CEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
I
C
>Mature Secondary Structure
MNPFLKLLILITITIIGSLDFKPYASSILIISGIIIASIFSSLDTLEILNSVKRFILMSI
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFMCVILALRYISGEPLKVVAVLGLGFRIILISIYTSIFVKTTDPTEFVISLIKYFKMPP
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCC
KVGYAFLTAYRFLPTFKEELQTIKYAHKVRGIVESKNPFIKVWNSKRYILPMMANAVRKG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCC
IRISMAMETRAFDKYKTRTYYRELHMPINEIIMTAIYILYIISVAVILYLNNLVTFSVKY
CEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]