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The map label for this gene is nisX1 [H]

Identifier: 153936356

GI number: 153936356

Start: 887371

End: 888093

Strand: Direct

Name: nisX1 [H]

Synonym: CLC_0865

Alternate gene names: 153936356

Gene position: 887371-888093 (Clockwise)

Preceding gene: 153936924

Following gene: 153936065

Centisome position: 23.6

GC content: 29.05

Gene sequence:

>723_bases
GTGTTAAAGAAGGAAATCCAACAAATTTTTGTAGAAAACAAAGAACGTTATGGGTCTATTAGAATAGCAAAAGTATTAAA
CAATAGAGGAGTCCATATAAGTAGGAAACGTGTATCAAGGCTCATGGAAGAATTGAAATTATATCCAAAAGGAATACGAT
ATAGATATAAACGATATAATCAAAAATCAAATGCTATAGAACGTCCAAACCTATTGAATCAAATGTTTCGTACAGATAAG
AACAATAAAATATGGGTTGGCGATATAACATATATACCAAATAAAAAAGGAAGCTTATATTTAGCTGTTTTTCTTGACAT
TTATTCAAGGAAAGTAGTTGGTTGGTCTATGAGTAAGAAAATCAAAGATACTTTAGTTATTGATGCTTTCACTCAAGCTT
ATGGTAAAGAACATCCATCAGAAGGATTAATTGTACATACTGATCAAGGATCACAATTTACAGATGGAATATTTAGAGTC
TTATTATCTAAATATAGTTCTGTACATAGTAATAGTAGAAAAGGAAATCCTTATGATAATGCAGTTATGGAATCCTTTTA
TAGAACTATAAAAAGAGAGCTTATTCAAGATGCCAAATACGAAACTCCCGAACAAGCTGAAAAAGAAATTTTTAAATATA
TCGAATTGTATTATAACACAAAGCGAATTCATTCTTCATTAGGTTATATTTCACCTGCCCAATTTGAAAATTTAAACTCA
TAA

Upstream 100 bases:

>100_bases
ATATAACATCAAGAAGGCTTGTAAAACATTAAATATATCAAGATCTGGTTTTTATAAATTCTTAAATCATAAACCTTCTA
ACCGAGATATTGAAAATTAA

Downstream 100 bases:

>100_bases
AATTAACTTAACTTTATGTCTACTTCTTGTTGACAGTTCCAAACAGCTTATTTTAAAAATGTCTACTTATTTGGATTCAT
ACCAATTCAGGGACAGCCCA

Product: IS3 family transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLKKEIQQIFVENKERYGSIRIAKVLNNRGVHISRKRVSRLMEELKLYPKGIRYRYKRYNQKSNAIERPNLLNQMFRTDK
NNKIWVGDITYIPNKKGSLYLAVFLDIYSRKVVGWSMSKKIKDTLVIDAFTQAYGKEHPSEGLIVHTDQGSQFTDGIFRV
LLSKYSSVHSNSRKGNPYDNAVMESFYRTIKRELIQDAKYETPEQAEKEIFKYIELYYNTKRIHSSLGYISPAQFENLNS

Sequences:

>Translated_240_residues
MLKKEIQQIFVENKERYGSIRIAKVLNNRGVHISRKRVSRLMEELKLYPKGIRYRYKRYNQKSNAIERPNLLNQMFRTDK
NNKIWVGDITYIPNKKGSLYLAVFLDIYSRKVVGWSMSKKIKDTLVIDAFTQAYGKEHPSEGLIVHTDQGSQFTDGIFRV
LLSKYSSVHSNSRKGNPYDNAVMESFYRTIKRELIQDAKYETPEQAEKEIFKYIELYYNTKRIHSSLGYISPAQFENLNS
>Mature_240_residues
MLKKEIQQIFVENKERYGSIRIAKVLNNRGVHISRKRVSRLMEELKLYPKGIRYRYKRYNQKSNAIERPNLLNQMFRTDK
NNKIWVGDITYIPNKKGSLYLAVFLDIYSRKVVGWSMSKKIKDTLVIDAFTQAYGKEHPSEGLIVHTDQGSQFTDGIFRV
LLSKYSSVHSNSRKGNPYDNAVMESFYRTIKRELIQDAKYETPEQAEKEIFKYIELYYNTKRIHSSLGYISPAQFENLNS

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=209, Percent_Identity=31.5789473684211, Blast_Score=105, Evalue=5e-23,
Organism=Escherichia coli, GI1788405, Length=231, Percent_Identity=36.3636363636364, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787263, Length=231, Percent_Identity=36.3636363636364, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1786753, Length=231, Percent_Identity=36.3636363636364, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1786570, Length=231, Percent_Identity=36.3636363636364, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1786490, Length=231, Percent_Identity=36.3636363636364, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1789981, Length=236, Percent_Identity=32.6271186440678, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 28257; Mature: 28257

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKEIQQIFVENKERYGSIRIAKVLNNRGVHISRKRVSRLMEELKLYPKGIRYRYKRYN
CCHHHHHHHHHHCHHHHCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHC
QKSNAIERPNLLNQMFRTDKNNKIWVGDITYIPNKKGSLYLAVFLDIYSRKVVGWSMSKK
CCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEHHHHHHHHHHHHHCCHHHHH
IKDTLVIDAFTQAYGKEHPSEGLIVHTDQGSQFTDGIFRVLLSKYSSVHSNSRKGNPYDN
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AVMESFYRTIKRELIQDAKYETPEQAEKEIFKYIELYYNTKRIHSSLGYISPAQFENLNS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
>Mature Secondary Structure
MLKKEIQQIFVENKERYGSIRIAKVLNNRGVHISRKRVSRLMEELKLYPKGIRYRYKRYN
CCHHHHHHHHHHCHHHHCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHC
QKSNAIERPNLLNQMFRTDKNNKIWVGDITYIPNKKGSLYLAVFLDIYSRKVVGWSMSKK
CCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEHHHHHHHHHHHHHCCHHHHH
IKDTLVIDAFTQAYGKEHPSEGLIVHTDQGSQFTDGIFRVLLSKYSSVHSNSRKGNPYDN
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AVMESFYRTIKRELIQDAKYETPEQAEKEIFKYIELYYNTKRIHSSLGYISPAQFENLNS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]