Click here to switch to the map view.

The map label for this gene is yclJ [H]

Identifier: 153936292

GI number: 153936292

Start: 849126

End: 849818

Strand: Direct

Name: yclJ [H]

Synonym: CLC_0832

Alternate gene names: 153936292

Gene position: 849126-849818 (Clockwise)

Preceding gene: 153935563

Following gene: 153937215

Centisome position: 22.58

GC content: 28.14

Gene sequence:

>693_bases
ATGAGCGAAGATATTAAAATATTAGTTGTGGAAGATAATAATGATATAAATAAGTTATTATGCGATATGTTAAGACAAAG
CGAATATATTACTAAATCAGCTTATTCTGGAACAGAAGCTTTAATATATTTAAAAGAATATAATTGGGATATGGTTTTAT
TAGATTTAATGTTACCGGGTATGGATGGTAAAGAGCTTTTATCTAATATAAGAAAAAGTAAACCTATGCCTGTAATAATA
ATTTCAGCTAAAGAAGAAAAAGATATCAAAATAGAAACTTTAAGAATGGGAGCAGATGATTACATAACAAAACCTTTTGA
TATAGATGAGGTGTCAGCTAGAATAGATTCCCACCTTAGAAGATATAAAGAATTTTCCAATATAACACTACAAAATTTAT
TAAAATACAAAGAAATATCTCTTAACAAAGATACTAGAGAAGTCTTTATACATAATAAACAGATAATGTTAACTACTAGA
GAGTTTGATATCCTGCAGCTTTTGATGGGTTATCCTAAAAAGGTTTTTACTAAGGCTAATTTATTTGAAAGCGTATGGAG
CAGTGAGTATTTGTGTGATGATAATACTATTAATGTACATATAAGTAATTTAAGAAATAAGTTGTCCAAAGCAGGCACAG
ACAATGAATATATCCAAACCATTTGGGGAATCGGGTATAAGCTAGATAGCTAA

Upstream 100 bases:

>100_bases
ATATTTAAAATTAAGTTTTTATTTTTTGTCTACCCACTATACCTGTTATAATAACAGTAAGGGCTAAGGTAAATATTAAC
TATATTGGGGGGAAGTATTA

Downstream 100 bases:

>100_bases
TATTAACACTTAAAAATTTTATTATAGCCTAGGTTTTTCCCTTTAATTTTTTACTTAAGACTTTCTTAAGGTTTTTCTTT
ATAATTCATTATGAATTAAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSEDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPGMDGKELLSNIRKSKPMPVII
ISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTR
EFDILQLLMGYPKKVFTKANLFESVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLDS

Sequences:

>Translated_230_residues
MSEDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPGMDGKELLSNIRKSKPMPVII
ISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTR
EFDILQLLMGYPKKVFTKANLFESVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLDS
>Mature_229_residues
SEDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPGMDGKELLSNIRKSKPMPVIII
SAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTRE
FDILQLLMGYPKKVFTKANLFESVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLDS

Specific function: Could be member of the two-component regulatory system yclK/yclJ [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=35.2173913043478, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=31.5789473684211, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=33.7777777777778, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789402, Length=229, Percent_Identity=33.6244541484716, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=29.9107142857143, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=30.1801801801802, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=32.2869955156951, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786784, Length=230, Percent_Identity=27.3913043478261, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=31.8385650224215, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI2367329, Length=225, Percent_Identity=31.5555555555556, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=27.3127753303965, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1790299, Length=119, Percent_Identity=36.1344537815126, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=25.8771929824561, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=25.8771929824561, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=35.1851851851852, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790437, Length=118, Percent_Identity=35.5932203389831, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI145693157, Length=124, Percent_Identity=32.258064516129, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26809; Mature: 26678

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPG
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEHHCCC
MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR
CCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHHHHH
RYKEFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKAN
HHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCEEEEEECHHHHHHHHHCCCHHHHHHHH
LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLDS
HHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHCCEEECC
>Mature Secondary Structure 
SEDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEHHCCC
MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR
CCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHHHHH
RYKEFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKAN
HHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCEEEEEECHHHHHHHHHCCCHHHHHHHH
LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLDS
HHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]