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The map label for this gene is yrrC [H]

Identifier: 153936042

GI number: 153936042

Start: 194946

End: 197180

Strand: Direct

Name: yrrC [H]

Synonym: CLC_0223

Alternate gene names: 153936042

Gene position: 194946-197180 (Clockwise)

Preceding gene: 153936792

Following gene: 153935299

Centisome position: 5.18

GC content: 29.26

Gene sequence:

>2235_bases
ATGCAGGAAATACAGGGATTTATAGAGGATATACTTTTTAAAAATGATGAAAATGGGTATGTAGTGGCAAAAATAAGGAA
GAAGAAAGAGCTTATAACCATAGTCGGATGTATGCCCTACATAACAGAAGGACAAAACTTAAAATTAAAAGGTGAATGGG
TAATTCATCCACAATTTGGTAATCAATTCAAAGTAGAAATATGTGAAGAAATAGTACCCGATACTGTAGCTGGCATAGAA
AGATATTTATCCTCAGGAATCATATCAGGTATAGGCCCAGTGACTGCAAAAAAAATTGTAAAAAAATTTGGAGAAGAAAC
ATTAAATATATTAGACAATAATATAGAAAGATTAACAGAGATAGAGGGAATAGGAAAGAAGAAGATAGAAGTAATATATG
ATTCCTATATAAAACAAAATGAAGTGCGAAATATAATGATGTTTTTTCAAAATTACGGAGTTACACCTAACCAATGCATG
AAAGTTTATAAAAGATTTGGAGAAAATTCTATATCAATAGTTAAAGAGAATCCATATATACTTACGGAAGAAATAAGAGG
AATAGGTTTCAAGACAGCAGATAAAATAGCTAGGAGCTTAGGAATAGCCTCTAATTCACCTTTTAGAATTCAGAGTGGAA
TAAATTATATAATAAATGGATTCTGTAGTTTAGGAAATACTTATATGCCTTTAGAGAAGCTTATAAGTGAGGCTATGGAC
ATATTAGGAGTAAAAGAAGAAGAAATACATGAAAATATATATAATAATGTAGCAGAAAATAAATTAAAGATAGAAAAAGT
AAAAGAACGAAGTTGTGTTTTTACTCTACCGTATTATTATTGCGAATTAGGAGTTACAAAAAAAATACTTAGTTTATCTT
TGTCACAATATGATAATTTAAATATAAATATAGAAGACGAGATAGTGAGGTTTGAAAAAAATAATAATATAAAATTTCAT
GATTCTCAAAGAGAGGCTATAAAAGGTGCCTTAGAAAATGGAGTAGAAATAATAACAGGAGGCCCTGGTACAGGAAAAAC
AACTATTATTAATTGTATAACAGAGATATTTGAAAAAGCTAATATGAAAGTTTATATGGCAGCACCTACAGGAAGAGCGG
CTAAAAGAATGTCTGAAACTACAGGTAGAGAAGCTAAAACAATACATAGGATGTTAGAAATGGGTGTATCTGAGGATGAC
ACAGAAGAAGTTTTTTCTAAAGGTGAAGAAACTCCTTTAGAATGTGATGTAGTAATAATAGATGAAGCTTCCATGATAGA
TATAATATTAATGAATACACTGTTAAAGGCCATAGCTTTAGGTACAAGAATAATAATAGTTGGGGATGTAGATCAACTTC
CCTCAGTAGGTCCAGGGAATGTATTAAGAGATTTAATAGAAAGTAAGTGTGTAAAGGTAGTTAGATTAAAGGAGATATTC
AGACAATCTAAAGAAAGTATGATTATAGTAAATGCCCATAGAATAAATGATGGAGAGATGCCAATTATAAATAAAAAAGA
TAAAGATTTTTATTTTATAGAATGTAGTGAACCTAAAAAAATAGTTAATACATTATTAGAACTTTCAAATAGAAGATTGC
CTAAATTTAATAAAAGTTGGCATAAAATTCATGATATACAAATACTATCTCCAATGAGAAAGGGAATTCTAGGAGTTTCT
AGTTTAAATAAGGAATTACAATCTGTTTTAAACCCTAAAAATGATTCAAAAAAAGAAATGGAATTTAAGGACTATATATT
TAGAGTAGGAGATAAAGTTATGCAAACCAAAAATAACTACTCTTTAAAGTGGACCAGAGCAAGTGGTGAGGGGGAAGCAG
AGGGGTTAGGAATATTTAATGGAGATGTAGGATATATAGAGGATATAGATGAGGAAAAAGAAACAATTCAGGTCTTATTT
GATAATGAAAGAAGAGTAGTATATGAAAATTTATATCTAGATGAAATAGATTTAGCTTATGCTGTAACTATTCATAAAAG
TCAAGGTAGCGAATTTCCAGTAGTAATTATGCCAGCTTTTAAAGGTCCCCCACTTTTAATGAATAGAAATTTATTGTATA
CAGGAATAACAAGAGCAAAAAGGCTTGTTGTCTTGGTAGGATCTTTAAAAGCTATTAATTTTATGGTACAGAATGATAAA
ATTTTTGAAAGATACTCTCTTTTGAAGTGGCGTATAAGTAATATTTTAGATACTGAAATTATAAATGGAGAATAA

Upstream 100 bases:

>100_bases
AATGAATAGCTAAAATTAAAAAAGTATAGATTCCTATACTTATAAGCAGCGGTACTATGAATAATAATGATGGAATGAAA
AAGATTAGGAGAGATTTTTT

Downstream 100 bases:

>100_bases
TATATTATATAGAAGGTGAACCTGTATGTCTTTACTTAAAAGGTCCAAAAAAGAATATGAAGTTAATGAATTTAGTGAAA
TTATATTAAATTGGTGTAAA

Product: RecD/TraA family helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEICEEIVPDTVAGIE
RYLSSGIISGIGPVTAKKIVKKFGEETLNILDNNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM
KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLISEAMD
ILGVKEEEIHENIYNNVAENKLKIEKVKERSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVRFEKNNNIKFH
DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD
TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGILGVS
SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF
DNERRVVYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKAINFMVQNDK
IFERYSLLKWRISNILDTEIINGE

Sequences:

>Translated_744_residues
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEICEEIVPDTVAGIE
RYLSSGIISGIGPVTAKKIVKKFGEETLNILDNNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM
KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLISEAMD
ILGVKEEEIHENIYNNVAENKLKIEKVKERSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVRFEKNNNIKFH
DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD
TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGILGVS
SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF
DNERRVVYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKAINFMVQNDK
IFERYSLLKWRISNILDTEIINGE
>Mature_744_residues
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEICEEIVPDTVAGIE
RYLSSGIISGIGPVTAKKIVKKFGEETLNILDNNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM
KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLISEAMD
ILGVKEEEIHENIYNNVAENKLKIEKVKERSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVRFEKNNNIKFH
DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD
TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGILGVS
SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF
DNERRVVYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKAINFMVQNDK
IFERYSLLKWRISNILDTEIINGE

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=430, Percent_Identity=26.2790697674419, Blast_Score=119, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 84573; Mature: 84573

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFG
CHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEEECCHHHCCCCCEEEEEEEEEECCCC
NQFKVEICEEIVPDTVAGIERYLSSGIISGIGPVTAKKIVKKFGEETLNILDNNIERLTE
CEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCMKVYKRFGENSISIVKENPYI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCEE
LTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLISEAMD
EEHHHCCCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
ILGVKEEEIHENIYNNVAENKLKIEKVKERSCVFTLPYYYCELGVTKKILSLSLSQYDNL
HHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCC
NINIEDEIVRFEKNNNIKFHDSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKA
CEEEHHHEEEEECCCCEEEECCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
NMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDDTEEVFSKGEETPLECDVVII
CCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEE
DEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSW
HCCCCCEEEEEEEECCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCH
HKIHDIQILSPMRKGILGVSSLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNY
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLFDNERRVVYENLYLDEIDLAY
EEEEEECCCCCCCCCEEEECCCCCCHHCCCCHHHEEEEEECCCCEEEEEEEEEECCCEEE
AVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKAINFMVQNDK
EEEEECCCCCCCCEEEEECCCCCCEEECCCEEEECHHHHHEEEEEEECCEEEEEEECCCH
IFERYSLLKWRISNILDTEIINGE
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFG
CHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEEECCHHHCCCCCEEEEEEEEEECCCC
NQFKVEICEEIVPDTVAGIERYLSSGIISGIGPVTAKKIVKKFGEETLNILDNNIERLTE
CEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCMKVYKRFGENSISIVKENPYI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCEE
LTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLISEAMD
EEHHHCCCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
ILGVKEEEIHENIYNNVAENKLKIEKVKERSCVFTLPYYYCELGVTKKILSLSLSQYDNL
HHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCC
NINIEDEIVRFEKNNNIKFHDSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKA
CEEEHHHEEEEECCCCEEEECCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
NMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDDTEEVFSKGEETPLECDVVII
CCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEE
DEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSW
HCCCCCEEEEEEEECCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCH
HKIHDIQILSPMRKGILGVSSLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNY
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLFDNERRVVYENLYLDEIDLAY
EEEEEECCCCCCCCCEEEECCCCCCHHCCCCHHHEEEEEECCCCEEEEEEEEEECCCEEE
AVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKAINFMVQNDK
EEEEECCCCCCCCEEEEECCCCCCEEECCCEEEECHHHHHEEEEEEECCEEEEEEECCCH
IFERYSLLKWRISNILDTEIINGE
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]