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The map label for this gene is pchR [H]

Identifier: 153935880

GI number: 153935880

Start: 1123477

End: 1124478

Strand: Direct

Name: pchR [H]

Synonym: CLC_1101

Alternate gene names: 153935880

Gene position: 1123477-1124478 (Clockwise)

Preceding gene: 153936959

Following gene: 153936893

Centisome position: 29.88

GC content: 30.44

Gene sequence:

>1002_bases
ATGGAATTGTGTACAGCTAAACAATATGAAATAAAAAGTTCAAAAGCTAATGATTGTTGCATTTGTGATGGCTTTAATAA
AATCTACAACAAAGGCTGTGGGCAATATAGTTACCCAATTCCCCAGGAGCTAGGAAGTGGACATTTAAAACAATTATTAA
GTTGTGAAAATGCTCGTATTATGGAATTTGATATTAATTTGTTGAAACAAGTGGAACTTAATGGAACTTCAAGAATACCT
CACATAGACATGCTTTTTTGTCTTGGTGATGATTTGCAATGGGATTTACCCCAAACAGGTAAAAAATTTGAGATGCTGTC
TGGTGAAAGCTATATGGGTACTAGTGAAGAAACTATAAAAAGATGCATTTATCCTGCAAAGTGTGATATTAGGTTAATTG
AAATTAAAATGCCTTTGAAGAAAATGAAAGATACTATTGATAAAATTTGTGAAGAATGCAGTTCTTGTAGACATTTTTCA
AATGAAGTATGGGCTGATAATTTAAAAATAACACCTTCTATTAATGTAATTTTGAATCAGATGCTAAAATGTCCCTATGA
AGAATCCTTAAGATATTTATATATGGAAGGAAAGCTTATGGAACTTGTGGCTGTATATTTAAATGAGGTTATGTATCAGA
GTAAAGGAATTTCAAAGAGTATAAGTTTATCTAAAGATGATGTTAAAAGTATTTATAAAGCAAAGGACATACTAGATAAA
AGCATTACTCAGAAAATCACATTAAGTTATCTTTCAAAGGAAGTTTGTCTTAATGAATTTAAACTAAAAAAAGGATTCAA
AGAAGTGTTCGGGATGCCTGTATACACTTACCTTTTAGATAAACGATTGGAACTTGCTAAGTTTTTTTTAGAGGAGAAAC
AACTACGTGTTAGTGATGTGGCTAACCTTGTTGGTTATGGAAATATGAGCCATTTTGCAGCAGCTTTCAGAAAAAAATAT
GGAGTAAATCCTAGTGAATATATCAAAGATATTTCAAAATAA

Upstream 100 bases:

>100_bases
TATCATAGTTACTTAGATAAAATATTAGTAGAAAACTTTATTTTAATATTTTATCTAGTAAAGAAATTTAGGTATATCAA
TTAAGAAGGGAGTAATGGGG

Downstream 100 bases:

>100_bases
ATTATTAAATTTTACTGCATACATGCTATTGTATTGCAGTATTTTTTTGTGTGAAAATCCTAATTTGAGCGAATATAATA
CCGATTTGAGTAGAGATGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARIMEFDINLLKQVELNGTSRIP
HIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHFS
NEVWADNLKITPSINVILNQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDILDK
SITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDVANLVGYGNMSHFAAAFRKKY
GVNPSEYIKDISK

Sequences:

>Translated_333_residues
MELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARIMEFDINLLKQVELNGTSRIP
HIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHFS
NEVWADNLKITPSINVILNQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDILDK
SITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDVANLVGYGNMSHFAAAFRKKY
GVNPSEYIKDISK
>Mature_333_residues
MELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARIMEFDINLLKQVELNGTSRIP
HIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIKRCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHFS
NEVWADNLKITPSINVILNQMLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDILDK
SITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDVANLVGYGNMSHFAAAFRKKY
GVNPSEYIKDISK

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38306; Mature: 38306

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARI
CCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCCHHHCCHHHHHHHCCCCCEE
MEFDINLLKQVELNGTSRIPHIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIK
EEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHCCCCCCCCCCHHHHH
RCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHFSNEVWADNLKITPSINVILNQ
HHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEECCHHHHHHHH
MLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDILDK
HHCCCHHHHHHEEHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
SITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLVGYGNMSHFAAAFRKKYGVNPSEYIKDISK
HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MELCTAKQYEIKSSKANDCCICDGFNKIYNKGCGQYSYPIPQELGSGHLKQLLSCENARI
CCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCCHHHCCHHHHHHHCCCCCEE
MEFDINLLKQVELNGTSRIPHIDMLFCLGDDLQWDLPQTGKKFEMLSGESYMGTSEETIK
EEEHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHCCCCCCCCCCHHHHH
RCIYPAKCDIRLIEIKMPLKKMKDTIDKICEECSSCRHFSNEVWADNLKITPSINVILNQ
HHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEECCHHHHHHHH
MLKCPYEESLRYLYMEGKLMELVAVYLNEVMYQSKGISKSISLSKDDVKSIYKAKDILDK
HHCCCHHHHHHEEHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
SITQKITLSYLSKEVCLNEFKLKKGFKEVFGMPVYTYLLDKRLELAKFFLEEKQLRVSDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLVGYGNMSHFAAAFRKKYGVNPSEYIKDISK
HHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]