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The map label for this gene is stc [H]

Identifier: 153935787

GI number: 153935787

Start: 34004

End: 35542

Strand: Direct

Name: stc [H]

Synonym: CLC_0046

Alternate gene names: 153935787

Gene position: 34004-35542 (Clockwise)

Preceding gene: 153934746

Following gene: 153937734

Centisome position: 0.9

GC content: 23.98

Gene sequence:

>1539_bases
ATGAAATTAGAAATAATAACAGAAGATCGTTTAGGCATGGTGCTAGATATTTTAAATGTGTTATACAATGAGAGTATGGA
TATAAAATCTCTAGAGGTATTTTCTAAAAAAATATATATAAAAATAAATAAAAAGATTTCTTACAACAAAAACATGATAA
TCAAGAAAATAAAAAATATAAAGGGAGTAGTAAGGGTAAAAAAGATAGATATACTGCCTTATGAAAAGGATGAAAAAAAA
TTGTTTACTATAATTGATTCTTTGGAGGAGGGAGTAATTTTTGTCAATGAAAAATGTCAAGTAGAGGTTTTTAATAAATA
CTGTGAAAACTTATTTAATACTTTAAAAGAAAATGCAATTAGAAAGCATATAAAAGAAATTTTGGGACAAAATCAACTCA
TATTAGATGCTTTAAAAATGGGAAAAGATTATGATAATTTACAAGTCTTCATTAATAATAAAGATAGAAAGGGAATGTAT
GTATCTACAGCAAGAGCTATTAAAGATGATAAGAATAAAACAATAGGATTTGTTATATTAATAAAAGATTTAAAAGAAAC
TATTGAAATAGTAAATTCTATTAAATATAAGGAAGATGAAGCATTTAAGGGGATAATAGGAAAAAGTATCTGTATTGATA
ATTTAAAAGAAATATGTAAATCAGTTGCTAAAACAAATTCAACCGTATTAATTTGTGGAGAATCTGGAACAGGAAAAGAA
CTTTTTGCAAAGGCTATTTATAAATTAAGCTTGAGAAATAATAAAAACTTTGTTACTGTAAATTGTGCTGGTTTACAGGA
TAATTTAATAGAAAGTGAACTTTTTGGTTATGAAGCAGGAAGTTTTACAGGAGCTAAATCTAATGGTAAAGAAGGTTTTT
TTAAGTTAGCGGATAAAGGTACTATATTTTTAGATGAAATTGGAGAACTTCCTCTTAATATTCAATGTAAATTTTTAAGA
GTATTACAAGAAGGAACTATAAGAAAAATAGGAAGTACAAAGGAAGAAAAAATAGATGTGAGAATAATTGCTGCTACTAA
TAAAAATTTAGAAGAAATGGTTTTAAACGGAAAATTTAGAGAAGACTTATACTATAGATTAAATGTAGTACCTATAGAAA
TACCTCCACTAAGAGAAAGAAAAGAAGATATACAATTATTAGTAGATAATTTTGTAAAAGCTTTAAATAAAAGTTTAAAT
AAAAATATTAGATATATAGATAAAAAATTTATAAATAAATTATTAAAATATAATTTCCCAGGTAATATTAGGGAACTTCA
AAATATAATTGAAAGAACTATGAATTTGTGTTCGGACAATATATTAAGTGATAAAAATCTCAGTATAAATACTAATATTA
CATTAAATAATGATAGTGGTGCATTACTTTTACAAGATATAGTGGAGAAAGCAGAAAAATGTGCTATACAGAAGGTAATG
AATGAATATAAAAGTTTAAGAAAAGTAGGCAAAGTATTAGGAGTTTCTCATACTACTGTAATGAATAAAATAAAAAAATA
TGGAATTGTATGTAAATAA

Upstream 100 bases:

>100_bases
TTATTTTTTGTAAATAATAATATCAATTAAATATAATTTAAATTTGATATAATATAAAATAATAGGTATTATTTAGTATT
CCATAAAAGGGGCGAATTCT

Downstream 100 bases:

>100_bases
ATATTTACAATTGTAAAAAAATATTGCCAGTTTCAAATAAAATTATGTTATAGACTATTTATATCTTCAGGTTAATATAG
TTAATTTATATATTTAAGAC

Product: putative sensory box sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFSKKIYIKINKKISYNKNMIIKKIKNIKGVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKTIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDSGALLLQDIVEKAEKCAIQKVM
NEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK

Sequences:

>Translated_512_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFSKKIYIKINKKISYNKNMIIKKIKNIKGVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKTIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDSGALLLQDIVEKAEKCAIQKVM
NEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK
>Mature_512_residues
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFSKKIYIKINKKISYNKNMIIKKIKNIKGVVRVKKIDILPYEKDEKK
LFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAIRKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMY
VSTARAIKDDKNKTIGFVILIKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKGTIFLDEIGELPLNIQCKFLR
VLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFREDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLN
KNIRYIDKKFINKLLKYNFPGNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDSGALLLQDIVEKAEKCAIQKVM
NEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK

Specific function: Unknown

COG id: COG3283

COG function: function code KE; Transcriptional regulator of aromatic amino acids metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=451, Percent_Identity=34.3680709534368, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI87082117, Length=388, Percent_Identity=39.1752577319588, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1787583, Length=528, Percent_Identity=30.6818181818182, Blast_Score=268, Evalue=5e-73,
Organism=Escherichia coli, GI1789087, Length=317, Percent_Identity=43.5331230283912, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1788550, Length=306, Percent_Identity=42.8104575163399, Blast_Score=251, Evalue=5e-68,
Organism=Escherichia coli, GI1790437, Length=306, Percent_Identity=40.1960784313725, Blast_Score=241, Evalue=6e-65,
Organism=Escherichia coli, GI1788905, Length=327, Percent_Identity=38.8379204892966, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1786524, Length=321, Percent_Identity=36.1370716510903, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1790299, Length=330, Percent_Identity=36.0606060606061, Blast_Score=228, Evalue=6e-61,
Organism=Escherichia coli, GI87082152, Length=235, Percent_Identity=47.6595744680851, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI87081872, Length=319, Percent_Identity=34.4827586206897, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI87081858, Length=435, Percent_Identity=25.9770114942529, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1789828, Length=234, Percent_Identity=33.7606837606838, Blast_Score=136, Evalue=4e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 58548; Mature: 58548

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFSKKIYIKINKKISYNKNMIIKKIKNI
CEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHCEEEEEEEECEECCCCHHHHHHHHHH
KGVVRVKKIDILPYEKDEKKLFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAI
HHEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMYVSTARAIKDDKNKTIGFVIL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCCEEEEEEE
IKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
EHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKG
HHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
TIFLDEIGELPLNIQCKFLRVLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFR
EEEEEHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHCCCHH
EDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLNKNIRYIDKKFINKLLKYNFP
HCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
GNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDSGALLLQDIVEKAEKCAIQKVM
CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
NEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLEIITEDRLGMVLDILNVLYNESMDIKSLEVFSKKIYIKINKKISYNKNMIIKKIKNI
CEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHCEEEEEEEECEECCCCHHHHHHHHHH
KGVVRVKKIDILPYEKDEKKLFTIIDSLEEGVIFVNEKCQVEVFNKYCENLFNTLKENAI
HHEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RKHIKEILGQNQLILDALKMGKDYDNLQVFINNKDRKGMYVSTARAIKDDKNKTIGFVIL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHCCCCCEEEEEEE
IKDLKETIEIVNSIKYKEDEAFKGIIGKSICIDNLKEICKSVAKTNSTVLICGESGTGKE
EHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
LFAKAIYKLSLRNNKNFVTVNCAGLQDNLIESELFGYEAGSFTGAKSNGKEGFFKLADKG
HHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
TIFLDEIGELPLNIQCKFLRVLQEGTIRKIGSTKEEKIDVRIIAATNKNLEEMVLNGKFR
EEEEEHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEEEECCCCHHHHHHCCCHH
EDLYYRLNVVPIEIPPLRERKEDIQLLVDNFVKALNKSLNKNIRYIDKKFINKLLKYNFP
HCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
GNIRELQNIIERTMNLCSDNILSDKNLSINTNITLNNDSGALLLQDIVEKAEKCAIQKVM
CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
NEYKSLRKVGKVLGVSHTTVMNKIKKYGIVCK
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA