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The map label for this gene is licT [H]

Identifier: 153935729

GI number: 153935729

Start: 955913

End: 956746

Strand: Direct

Name: licT [H]

Synonym: CLC_0933

Alternate gene names: 153935729

Gene position: 955913-956746 (Clockwise)

Preceding gene: 153935773

Following gene: 153936097

Centisome position: 25.42

GC content: 26.02

Gene sequence:

>834_bases
ATGAAAGTTGTTAAAGTAATTAATAATAATTTGATTAAATCCTTCGATGATAATAATAATGAAATATTAGTCATGGGATG
TGGATTAGGTTATAAAAAGGCTCCTGGGCATGAAGTTGATGAAAAATTAATTGAGAGAATTTACACTTGTAATGATAGAA
AAGATTCTAATCAACTGACAAAATTACTAAAGAAAATACCTTTAGAACATATTCAAGTAACTAATCAGATAGTAAGTTTT
GCAAAAGCATCATTAGGTAAAAAATTAAATGAGAATGTGTATATAACCCTAGCAGACCATATTAACTTTGCAATAGAGAG
ACAAAAAGATGGCGTGGCTATAAAAAATGCTTTGCTATGGGAAATAAAGAAGTTCTATAATCATGAGTTTTTAGTAGGAA
AAGAGGCATTAAGCATAATAAAAAACAAGCTTGGTGTTACTCTATCAGAAGATGAAGCAGGATTCATTGCATTACATATA
GTAAATGCTTTGATGGATGATATATCTATACAAAAGGCTACTAAAATGACTAAGATGATTGAAAAAATAATTAACATAAT
TAAGTATTATTTTAACTTAGAATTAGATGAATATTCAATTCATTATGAAAGATTCATAACTCATCTTAAGTTTTTTGCTC
AAAGATTATTTACTGAAACAATTATTTCTGATGGAGATACGCAATTTATAGAAGTTTTAAAAAAACAATATAAAAAAGAA
TATGGATGTACACTAAAGATAAGAGATTTTATTAAAAATGAATATGGATGTGAATTGACAGAAGATGAAATGATTTACCT
GACTATTCACATAAAAAGAATTACAAGTATTTAA

Upstream 100 bases:

>100_bases
TCGGGCTATACCATCTTGTGTGTGAATTCTGTAATTGCGTTCAAATCACAAAGAGGTATAGCCTTTTTGGATTAATAAAG
ATGGAGGATATTTACAAATA

Downstream 100 bases:

>100_bases
AAGGATTGTTACTTTAAATAGGCTATACCTAAATAAAAATTTACTAGTTCTAGACTAATGAATTTTTATTTGGGTATTTT
TTATTGCTTATTTTAGAAGA

Product: transcription antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKVVKVINNNLIKSFDDNNNEILVMGCGLGYKKAPGHEVDEKLIERIYTCNDRKDSNQLTKLLKKIPLEHIQVTNQIVSF
AKASLGKKLNENVYITLADHINFAIERQKDGVAIKNALLWEIKKFYNHEFLVGKEALSIIKNKLGVTLSEDEAGFIALHI
VNALMDDISIQKATKMTKMIEKIINIIKYYFNLELDEYSIHYERFITHLKFFAQRLFTETIISDGDTQFIEVLKKQYKKE
YGCTLKIRDFIKNEYGCELTEDEMIYLTIHIKRITSI

Sequences:

>Translated_277_residues
MKVVKVINNNLIKSFDDNNNEILVMGCGLGYKKAPGHEVDEKLIERIYTCNDRKDSNQLTKLLKKIPLEHIQVTNQIVSF
AKASLGKKLNENVYITLADHINFAIERQKDGVAIKNALLWEIKKFYNHEFLVGKEALSIIKNKLGVTLSEDEAGFIALHI
VNALMDDISIQKATKMTKMIEKIINIIKYYFNLELDEYSIHYERFITHLKFFAQRLFTETIISDGDTQFIEVLKKQYKKE
YGCTLKIRDFIKNEYGCELTEDEMIYLTIHIKRITSI
>Mature_277_residues
MKVVKVINNNLIKSFDDNNNEILVMGCGLGYKKAPGHEVDEKLIERIYTCNDRKDSNQLTKLLKKIPLEHIQVTNQIVSF
AKASLGKKLNENVYITLADHINFAIERQKDGVAIKNALLWEIKKFYNHEFLVGKEALSIIKNKLGVTLSEDEAGFIALHI
VNALMDDISIQKATKMTKMIEKIINIIKYYFNLELDEYSIHYERFITHLKFFAQRLFTETIISDGDTQFIEVLKKQYKKE
YGCTLKIRDFIKNEYGCELTEDEMIYLTIHIKRITSI

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=274, Percent_Identity=36.4963503649635, Blast_Score=212, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32193; Mature: 32193

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVVKVINNNLIKSFDDNNNEILVMGCGLGYKKAPGHEVDEKLIERIYTCNDRKDSNQLT
CCHHEEHHCHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH
KLLKKIPLEHIQVTNQIVSFAKASLGKKLNENVYITLADHINFAIERQKDGVAIKNALLW
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHH
EIKKFYNHEFLVGKEALSIIKNKLGVTLSEDEAGFIALHIVNALMDDISIQKATKMTKMI
HHHHHHCCCEEEHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKIINIIKYYFNLELDEYSIHYERFITHLKFFAQRLFTETIISDGDTQFIEVLKKQYKKE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
YGCTLKIRDFIKNEYGCELTEDEMIYLTIHIKRITSI
HCCEEEEHHHHCCCCCCCCCCCCEEEEEEEEEEHHCC
>Mature Secondary Structure
MKVVKVINNNLIKSFDDNNNEILVMGCGLGYKKAPGHEVDEKLIERIYTCNDRKDSNQLT
CCHHEEHHCHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH
KLLKKIPLEHIQVTNQIVSFAKASLGKKLNENVYITLADHINFAIERQKDGVAIKNALLW
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHH
EIKKFYNHEFLVGKEALSIIKNKLGVTLSEDEAGFIALHIVNALMDDISIQKATKMTKMI
HHHHHHCCCEEEHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKIINIIKYYFNLELDEYSIHYERFITHLKFFAQRLFTETIISDGDTQFIEVLKKQYKKE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
YGCTLKIRDFIKNEYGCELTEDEMIYLTIHIKRITSI
HCCEEEEHHHHCCCCCCCCCCCCEEEEEEEEEEHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]