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The map label for this gene is xerD [C]

Identifier: 153935500

GI number: 153935500

Start: 2907285

End: 2908424

Strand: Direct

Name: xerD [C]

Synonym: CLC_2757

Alternate gene names: 153935500

Gene position: 2907285-2908424 (Clockwise)

Preceding gene: 153937327

Following gene: 153936426

Centisome position: 77.31

GC content: 28.07

Gene sequence:

>1140_bases
ATGAAAGGTGGAGTAAGAAAAAGAGGTAGTAGCTGGTACTACTACTTTGATGCTGGCACAGTTGAAGGCAAAAGAAAAAA
GATTGAAAGGAAGGGAGGTAGTACAAAAAAAGAAGCTGAAACTGCTCTTAGAAATGCTCTAAATGAATTTGAAAATTGTG
GTTCTCTATTAGATGAAAGCAATATTAGTATATCTGATTATTTTGATTATTGGCATAAAGAGTATGCTCTTATAAATTGC
AAATATAATACTCAAGTAAATTATAAAAAAATCATAGAAAACCATATAAAACCTAATTTGGGAGTTTATAAACTAAAGTC
CTTAACTCCGGCCATATTACAAGAGTTTTTAAATAAAAAATATAGAAATGGATTTGCTAAAAATACTTTATCTAATTTTT
ATGGTGTACTATCCGGGGCTTTAAAAATGGCGGTATACCCATATAAACTCATAAAGGAAAATCCTATGACTTATGTTACT
ATGCCTAAATATAATCAAATAAATAATGATAAAGATGATTTGAAAATATTATCTTTAGAAAATTTTAAAGAAATTATTAA
TCGCTTTCCTGAAGGTAGCAATTTCTATATTCCACTACAAATAGCTTTTAATACTGGTATGAGAGCAGCTGAAGTTTGTG
GTTTAACTTGGGACTGCATAAACTTAAAAAATAATACTATAACTATAAAAAAAATAATTATATATAAAAATAAAGAATGG
ATCTTCGGAACTCCTAAAACCAAAAGTTCTTATAGAACCATCCCAATTGGAAATACACTTGTTAATATATTAAAACACCA
TAAAAAACACCAAATTAAAAATAAATTAAAGTATGGTAAACATTACACCAGTTCTAATTTTGTATGTACTAAAGAAAATG
GTGAACTAGTCACTACAAACAGTTTAAAATATTTAAGCCGCGTAGTCAATTATGAACTACAAATACCTTTTAATTTTCAC
TCTTTACGTCATACACATGCTACTATGCTATTAGAAGCTGGAGCAAATATAAAAGATATACAACAAAGACTAGGCCATAG
CAAAATTTCTACTACTATGGATACCTATTCCCACGTTACTAACACTCTAAAGCTTGATAGTGTTAACCGATTTGAAACTA
TTATATCTAAAATAAAATAG

Upstream 100 bases:

>100_bases
ACTTACTAGTTATAAATATAAAAAATAAATATACATTCAATGTGTATATAACCAATTTAAAATTGGATTATATAAATAAA
TACAAAAGGAGTGACACCTT

Downstream 100 bases:

>100_bases
TTTGCCACCAAGCATAAAAAAGCGGTGGCAAACGGGTGGCAAATGAATGATTTTTATAGTTTAAAATTAATTATACCATT
GATATTACTTACTTAGCTTA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKGGVRKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDESNISISDYFDYWHKEYALINC
KYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLNKKYRNGFAKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVT
MPKYNQINNDKDDLKILSLENFKEIINRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEW
IFGTPKTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTNSLKYLSRVVNYELQIPFNFH
SLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLKLDSVNRFETIISKIK

Sequences:

>Translated_379_residues
MKGGVRKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDESNISISDYFDYWHKEYALINC
KYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLNKKYRNGFAKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVT
MPKYNQINNDKDDLKILSLENFKEIINRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEW
IFGTPKTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTNSLKYLSRVVNYELQIPFNFH
SLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLKLDSVNRFETIISKIK
>Mature_379_residues
MKGGVRKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDESNISISDYFDYWHKEYALINC
KYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLNKKYRNGFAKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVT
MPKYNQINNDKDDLKILSLENFKEIINRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEW
IFGTPKTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTNSLKYLSRVVNYELQIPFNFH
SLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLKLDSVNRFETIISKIK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43815; Mature: 43815

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGGVRKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDES
CCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
NISISDYFDYWHKEYALINCKYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLNKK
CCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHH
YRNGFAKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVTMPKYNQINNDKDDLKILSLE
HHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEHH
NFKEIINRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEW
HHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHCCEEEEEECCCCEEEEEEEEEEECCCE
IFGTPKTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTN
EEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEC
SLKYLSRVVNYELQIPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVT
HHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH
NTLKLDSVNRFETIISKIK
HHEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MKGGVRKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDES
CCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
NISISDYFDYWHKEYALINCKYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLNKK
CCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHH
YRNGFAKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVTMPKYNQINNDKDDLKILSLE
HHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEHH
NFKEIINRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEW
HHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHCCEEEEEECCCCEEEEEEEEEEECCCE
IFGTPKTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTN
EEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEC
SLKYLSRVVNYELQIPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVT
HHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH
NTLKLDSVNRFETIISKIK
HHEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]