Click here to switch to the map view.

The map label for this gene is 153935413

Identifier: 153935413

GI number: 153935413

Start: 2770909

End: 2771727

Strand: Direct

Name: 153935413

Synonym: CLC_2639

Alternate gene names: NA

Gene position: 2770909-2771727 (Clockwise)

Preceding gene: 153937622

Following gene: 153936758

Centisome position: 73.68

GC content: 29.3

Gene sequence:

>819_bases
ATGGACAGATTACTTTTTGGAATATCCGGCCTACCTATAGGTGATGGAACTACTAAATTTAATTATAAATCAGGCATAAC
ATATTTAAATAATATAGGCTTAGATGCCATGGAATTACCCTTTGTAAGATCTGTTAATGTTACAGATAAAAACAAAGAAG
GCATATTAGAGGAAAAAAATAATAATAATTTTTATTTATCTGCCCATGGTTCCTACTTTATAAATCTAAACGCAGATGAA
ATAGAGAAACAAGAAAAATCTATGGAAAGAATAATAAAAGGTGCTGAGGGCTTAAAACAAGTTCAGGGAAGAAGCTTAAT
ATTTCATCCTGGATTTTATCTTAAGGACTCCAAAGAAGAGACTTTTAAAACTATTTTAGAGAATTTGAAAAAATTACCCG
ATTTAGGAGTAGACTATAGATTAGAAACTACTGGAAAAGGAACTCAATTCGGTTCTTTAGAAGAAAATGTAGCCTTATGT
AAAGAAGTTGATACTTGCAAATTATGTATAGACTTTTCTCATATACATGCTAGATCTAATGGTGGTTTAAAAAGCTATAA
AGATTTTTATAATATATTAAGTTATGTAGAAAAAAATCTAGGGAGATCTGCCTTAGATGATATGCATATCCATCTTTCCG
GAATACATTATAGTGAAAAAGGTGAAAGAAACCATCTTCCTTTTGAAGAAAGCGATTTTAACTATATTGCTTGCCTTAAA
GCTTTTAAAGATTTTGATATTAAAGGTTGTGTAATATGTGAAAGTCCAATACTTGAGAAAGATGCTCTTCTTCTTAAAAA
TTCATATTACGAACTTTAA

Upstream 100 bases:

>100_bases
ATTCTTATAAATATTATATAATAATCATTATCAAATTAGTTTTAAATTATATTTTTCATAATAATATGTATATTAAATTA
AAGCAATGGAGGTTTTATTT

Downstream 100 bases:

>100_bases
AATGGAAACTCAAAATAGATTTAATTTTAACCCGTAAATATAAATAAATACATTCACAATGCACTCCATTTTACTAAGAA
GTTCTAAATTTGACTCCATT

Product: AP endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MDRLLFGISGLPIGDGTTKFNYKSGITYLNNIGLDAMELPFVRSVNVTDKNKEGILEEKNNNNFYLSAHGSYFINLNADE
IEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEETFKTILENLKKLPDLGVDYRLETTGKGTQFGSLEENVALC
KEVDTCKLCIDFSHIHARSNGGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKGERNHLPFEESDFNYIACLK
AFKDFDIKGCVICESPILEKDALLLKNSYYEL

Sequences:

>Translated_272_residues
MDRLLFGISGLPIGDGTTKFNYKSGITYLNNIGLDAMELPFVRSVNVTDKNKEGILEEKNNNNFYLSAHGSYFINLNADE
IEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEETFKTILENLKKLPDLGVDYRLETTGKGTQFGSLEENVALC
KEVDTCKLCIDFSHIHARSNGGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKGERNHLPFEESDFNYIACLK
AFKDFDIKGCVICESPILEKDALLLKNSYYEL
>Mature_272_residues
MDRLLFGISGLPIGDGTTKFNYKSGITYLNNIGLDAMELPFVRSVNVTDKNKEGILEEKNNNNFYLSAHGSYFINLNADE
IEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEETFKTILENLKKLPDLGVDYRLETTGKGTQFGSLEENVALC
KEVDTCKLCIDFSHIHARSNGGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKGERNHLPFEESDFNYIACLK
AFKDFDIKGCVICESPILEKDALLLKNSYYEL

Specific function: Unknown

COG id: COG0648

COG function: function code L; Endonuclease IV

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001719
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 3.1.21.2

Molecular weight: Translated: 30896; Mature: 30896

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLLFGISGLPIGDGTTKFNYKSGITYLNNIGLDAMELPFVRSVNVTDKNKEGILEEKN
CCCEEEECCCCCCCCCCCEEECCCCCCEEHHCCCCCCCCCCEEECCCCCCCCCCCCEECC
NNNFYLSAHGSYFINLNADEIEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEE
CCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHH
TFKTILENLKKLPDLGVDYRLETTGKGTQFGSLEENVALCKEVDTCKLCIDFSHIHARSN
HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEHHHHEECCC
GGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKGERNHLPFEESDFNYIACLK
CCHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
AFKDFDIKGCVICESPILEKDALLLKNSYYEL
HHHCCCCCEEEEECCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MDRLLFGISGLPIGDGTTKFNYKSGITYLNNIGLDAMELPFVRSVNVTDKNKEGILEEKN
CCCEEEECCCCCCCCCCCEEECCCCCCEEHHCCCCCCCCCCEEECCCCCCCCCCCCEECC
NNNFYLSAHGSYFINLNADEIEKQEKSMERIIKGAEGLKQVQGRSLIFHPGFYLKDSKEE
CCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHH
TFKTILENLKKLPDLGVDYRLETTGKGTQFGSLEENVALCKEVDTCKLCIDFSHIHARSN
HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEHHHHEECCC
GGLKSYKDFYNILSYVEKNLGRSALDDMHIHLSGIHYSEKGERNHLPFEESDFNYIACLK
CCHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
AFKDFDIKGCVICESPILEKDALLLKNSYYEL
HHHCCCCCEEEEECCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]