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The map label for this gene is rpfG [H]

Identifier: 153935404

GI number: 153935404

Start: 3411207

End: 3412448

Strand: Direct

Name: rpfG [H]

Synonym: CLC_3264

Alternate gene names: 153935404

Gene position: 3411207-3412448 (Clockwise)

Preceding gene: 153936607

Following gene: 153937225

Centisome position: 90.71

GC content: 29.39

Gene sequence:

>1242_bases
ATGTATATAAGCATGGATAAAGTTTTAAGATCTATCTCTATAGCCTTAGACCTAGCTGAGATGAGTTCCATAGGAACCAA
TAGTATAATAGAAGATGTTACTAATATCGATTACTCAAAGCACTTATTTCTTAATCACTCTCAAAGGACATGCTATATAT
CTTTATGTCTAGCTAAAGCTCTAAATATAAGTGGTACTCATTTAGAAGAACTATATGTTTCTTCCCTGCTCCATGATATA
GGTGCTACAAACTTTCTCTCTAAAAGTCATTCTAGTAATGAATTTATTTTAGGACATTGCCTTACTGGTTCGGAAATAAC
TAAATCCTTCCCTATTTTTAATAATATATCTAACTTTATACTATATCATCATGAAAATTGGGATGGAAGTGGTGCTCTAA
AAATTAAAAAAGATCATATTCCTGTTCAAAGTCAAATAATAAGATTAGCAGATCTAACAGATCTTCTATATAGCGATGAT
ATACCTTCCTACTCACAAAAAACACATATAACGAGTTGGATTAAAAAAAATAAAAATAAGATCTTTTGTCCTGAAGTTGT
AGACGCTTTTTTAGAAGTATCTTCTACAGACATGTTTTGGTTAGATTTAGAAAATACCAGCTATTTAAAATATGTTTTAG
ACAAAGTTAGTCCTATATACGATTATGAATTAGATCTATATAAATTCATGGATATAGCTTATATATTTTCAGAAATAATA
GATAATAAAAGTGCTTTTACTGCTGAACATTCTAGGGAGATTGCAGAACTCTGTTATAAGGTCGGAAAAACCATAGGATA
TGATGAAACAAAATGCATAAAGCTTAAAATAGCTGGTCTTCTTCATGATATAGGGAAATTAGCTATACCAAAAGAAATCT
TAGATAAAAATGGCTCTTTAAATAAAGATGAATTTTCAATTATAAAATCTCATCCTTACTATACTAACATAATATTAAAT
AGATTCGGTGAAATTGGTGATATCGGATTTTGGGCATGCAATCATCATGAAAAATTAAATGGTAAAGGCTATCCTAGGGG
ATTAAAATCAAAGGACTTATGTGAAGAAGATAGAGTTATAGCAGTTTGTGACATATATCAAGCTCTAATAGAAGATAGGC
CTTATAGAGAAGGAATGGATTTTAATAGAGCTTTTTCTATATTAGATAAAATGGTATCAGAGGGCCTACTATGTGATAAA
GCTGTATATTACTTAAAAAAAGCTATAACACAAAAGAACTAA

Upstream 100 bases:

>100_bases
TACTATTTTATTCACTTTAGCTCATTAAGGGAATTATATTTATTATTTGATGTAGCTATGTTAAAATAATAAGGAAAATT
TAGTATTGAGAGGTTTTATT

Downstream 100 bases:

>100_bases
AGTTGTTTTTCGTCTATCTTTGTGCTATAAATATTTTGAGGTAGGATAAATTAAGATATGAACTATATAAAAATTTAGTG
GTTATAATATTTTACTTTTC

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKALNISGTHLEELYVSSLLHDI
GATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFILYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDD
IPSYSQKTHITSWIKKNKNKIFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
DNKSAFTAEHSREIAELCYKVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSLNKDEFSIIKSHPYYTNIILN
RFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVIAVCDIYQALIEDRPYREGMDFNRAFSILDKMVSEGLLCDK
AVYYLKKAITQKN

Sequences:

>Translated_413_residues
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKALNISGTHLEELYVSSLLHDI
GATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFILYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDD
IPSYSQKTHITSWIKKNKNKIFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
DNKSAFTAEHSREIAELCYKVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSLNKDEFSIIKSHPYYTNIILN
RFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVIAVCDIYQALIEDRPYREGMDFNRAFSILDKMVSEGLLCDK
AVYYLKKAITQKN
>Mature_413_residues
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKALNISGTHLEELYVSSLLHDI
GATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFILYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDD
IPSYSQKTHITSWIKKNKNKIFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
DNKSAFTAEHSREIAELCYKVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSLNKDEFSIIKSHPYYTNIILN
RFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVIAVCDIYQALIEDRPYREGMDFNRAFSILDKMVSEGLLCDK
AVYYLKKAITQKN

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 47150; Mature: 47150

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKA
CEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCEEHHHHHHHHH
LNISGTHLEELYVSSLLHDIGATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFI
HCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCHHHHCCCCHHCCCCEE
LYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDDIPSYSQKTHITSWIKKNKNK
EEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
IFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
EECHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
DNKSAFTAEHSREIAELCYKVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHCCCCCC
NKDEFSIIKSHPYYTNIILNRFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVI
CCHHHHHEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
AVCDIYQALIEDRPYREGMDFNRAFSILDKMVSEGLLCDKAVYYLKKAITQKN
EHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYISMDKVLRSISIALDLAEMSSIGTNSIIEDVTNIDYSKHLFLNHSQRTCYISLCLAKA
CEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCEEHHHHHHHHH
LNISGTHLEELYVSSLLHDIGATNFLSKSHSSNEFILGHCLTGSEITKSFPIFNNISNFI
HCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCHHHHCCCCHHCCCCEE
LYHHENWDGSGALKIKKDHIPVQSQIIRLADLTDLLYSDDIPSYSQKTHITSWIKKNKNK
EEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
IFCPEVVDAFLEVSSTDMFWLDLENTSYLKYVLDKVSPIYDYELDLYKFMDIAYIFSEII
EECHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
DNKSAFTAEHSREIAELCYKVGKTIGYDETKCIKLKIAGLLHDIGKLAIPKEILDKNGSL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHCCCHHHHCCCCCC
NKDEFSIIKSHPYYTNIILNRFGEIGDIGFWACNHHEKLNGKGYPRGLKSKDLCEEDRVI
CCHHHHHEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
AVCDIYQALIEDRPYREGMDFNRAFSILDKMVSEGLLCDKAVYYLKKAITQKN
EHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]