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The map label for this gene is yhdW [H]

Identifier: 153935403

GI number: 153935403

Start: 3292081

End: 3292836

Strand: Direct

Name: yhdW [H]

Synonym: CLC_3122

Alternate gene names: 153935403

Gene position: 3292081-3292836 (Clockwise)

Preceding gene: 153935642

Following gene: 153935590

Centisome position: 87.54

GC content: 25.26

Gene sequence:

>756_bases
ATGAAAAATTTTCCACTTAATATAGCTCACCGTGGTGCTAGTTCTTTAGCTCCTGAAAACACCTTAGAAAGCTTTAAGAA
GGCTATAGAATTAAGATGTGATGGAATAGAACTAGATATTCATATGACAAGAGATAATCAATTAATAGTTATACATGATG
AATTTTTAGATAGGACTACTAATGGTACTGGATCTGTTAGAAATTTAACCCTTAATGAAATAAAGAAATTAGACGCTGGA
AGCCATTTTAGTAATAAATTTAAATACTCTAAAATCCCTACTTTTAAAGAAGCATTAGATTTAATAGTTCCTTCTAACAT
TTTACTTGATGTAGAAATTAAGCAATGGGCACCTGAAATAGAGAAAAATGTGATAACTATGATACAAAATTATAACTATG
AGAAAAAAACTATAATAACATCTTTTAATCCGATGTCAGTTTTAAAATGCAAAGAAATTTCCAAGGATATTAAAACAGGT
CTTTTAGTTTTTTTTCTTCAAACTAACCCTTTAGACATGAAAAAAAAATTAAAAATAGATTATCTATGCATGGATGTAAA
TTATATTAAACTACTTTCACAAAATAATATTGATACTCTAAAAAAGAATAATTTAAAAATACTAACTTTCACAGTAGATA
GAAAGGATGATATGTCATACATGATTAAACATAAAGTTAATGGCATTATAACTAATAAACCACAATTATTAAACTCATTT
AAATATAATCCCTTTAACTTTATAAAATTTAAGTAA

Upstream 100 bases:

>100_bases
GAGTTATCAGACTTTAATGTACAAATAATTAATCATATAAGTGGTATTAATCATATAATATATTAATAATATTATGGGAA
AATAAGAAAGAGAGGTAGTA

Downstream 100 bases:

>100_bases
AAATTAGATAAAAAGGCCTTTCTTTAATAAATCTAATTCATGTAAAATCCGATTAAAAAAAGGCCTTTTTATTAAAATTT
GAATTACTTCTATTTCTAAA

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTRDNQLIVIHDEFLDRTTNGTGSVRNLTLNEIKKLDAG
SHFSNKFKYSKIPTFKEALDLIVPSNILLDVEIKQWAPEIEKNVITMIQNYNYEKKTIITSFNPMSVLKCKEISKDIKTG
LLVFFLQTNPLDMKKKLKIDYLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNSF
KYNPFNFIKFK

Sequences:

>Translated_251_residues
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTRDNQLIVIHDEFLDRTTNGTGSVRNLTLNEIKKLDAG
SHFSNKFKYSKIPTFKEALDLIVPSNILLDVEIKQWAPEIEKNVITMIQNYNYEKKTIITSFNPMSVLKCKEISKDIKTG
LLVFFLQTNPLDMKKKLKIDYLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNSF
KYNPFNFIKFK
>Mature_251_residues
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTRDNQLIVIHDEFLDRTTNGTGSVRNLTLNEIKKLDAG
SHFSNKFKYSKIPTFKEALDLIVPSNILLDVEIKQWAPEIEKNVITMIQNYNYEKKTIITSFNPMSVLKCKEISKDIKTG
LLVFFLQTNPLDMKKKLKIDYLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNSF
KYNPFNFIKFK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=258, Percent_Identity=28.2945736434109, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI260763876, Length=275, Percent_Identity=24.3636363636364, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI260763878, Length=167, Percent_Identity=30.5389221556886, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI260763880, Length=157, Percent_Identity=30.5732484076433, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1789858, Length=239, Percent_Identity=25.9414225941423, Blast_Score=97, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17542344, Length=265, Percent_Identity=24.5283018867925, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17561436, Length=155, Percent_Identity=33.5483870967742, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17564564, Length=155, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17556807, Length=155, Percent_Identity=27.741935483871, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 29098; Mature: 29098

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTRDNQLIVIHDEFLDRTT
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHEEECCEEEEEEEECCCEEEEEEHHHHCCCC
NGTGSVRNLTLNEIKKLDAGSHFSNKFKYSKIPTFKEALDLIVPSNILLDVEIKQWAPEI
CCCCCEEEEEHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCCEEEEEEHHHHCCHH
EKNVITMIQNYNYEKKTIITSFNPMSVLKCKEISKDIKTGLLVFFLQTNPLDMKKKLKID
HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCEEE
YLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNSF
EEEECCCEEEEECCCCCCHHCCCCEEEEEEEECCCCCHHHHHHHHCCEEECCCHHHHHHC
KYNPFNFIKFK
CCCCEEEEEEC
>Mature Secondary Structure
MKNFPLNIAHRGASSLAPENTLESFKKAIELRCDGIELDIHMTRDNQLIVIHDEFLDRTT
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHEEECCEEEEEEEECCCEEEEEEHHHHCCCC
NGTGSVRNLTLNEIKKLDAGSHFSNKFKYSKIPTFKEALDLIVPSNILLDVEIKQWAPEI
CCCCCEEEEEHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCCEEEEEEHHHHCCHH
EKNVITMIQNYNYEKKTIITSFNPMSVLKCKEISKDIKTGLLVFFLQTNPLDMKKKLKID
HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCEEE
YLCMDVNYIKLLSQNNIDTLKKNNLKILTFTVDRKDDMSYMIKHKVNGIITNKPQLLNSF
EEEECCCEEEEECCCCCCHHCCCCEEEEEEEECCCCCHHHHHHHHCCEEECCCHHHHHHC
KYNPFNFIKFK
CCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]