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The map label for this gene is 153935382

Identifier: 153935382

GI number: 153935382

Start: 384570

End: 385199

Strand: Direct

Name: 153935382

Synonym: CLC_0396

Alternate gene names: NA

Gene position: 384570-385199 (Clockwise)

Preceding gene: 153934648

Following gene: 153936997

Centisome position: 10.23

GC content: 26.83

Gene sequence:

>630_bases
ATGTTTTTGATTGAACAACTTTCAAATAAAATAGGTAATAAAATTGCAAATAATTTAGAATTAGATAAAGATACGGAAGA
GATTATTACATATGGAGCTTTTTCAGTATTGCAAGCAATATGGGCACTTTCATGTGTAGTAATTTTAGGTGCTATATGTA
ATGTATTAATTGAATCTGTAATTATCGCATTAACTGCAGCTACATATAGGAAATATTCTGGTGGAATGCATGCTAACACA
CCTAATAAGTGTGCAATTTTAGGAGCTATAGTTTTTGTAGGATTTGCACTTATAGTAAAAAATATTAATATAGGTGTGAA
TTTATTTCTTCCAGTAATTTGTATTTTTACATTCATTTATTCATATTATGCAATTTATAAATTTGTACCAGTAGATACCA
AAGCTAAGCCGATAGAAAATGAAAGTGAAATATTAAAATTAAGAAGGTATTCTTTTTTTATAATTAGCATTTTAATCCTT
ATTGAAGTACTACTTTTGTTATTTTATTTTAAATATAAGAATGAAATGTTGATTTATTACGCTAAATGTATAATTGCAGG
TGTTTTATGGCAGAGTTTTACTCTTACACCTTTAGCTAAAAGGGTGTTTGCCAATATAGCCATGGAGTAA

Upstream 100 bases:

>100_bases
AAGGATCCATTAAAAAAATGTATTTATTTAATGCCATCTATTATTGTTTTAGTAATTATAGTTTTATTTATACTTAAAAT
AAAAGATAGGAGAGTAAAGG

Downstream 100 bases:

>100_bases
CAAATTATTTCATTAAAGTCAATTATATGTTAATATGTAATGTATAATAATATAAAATTATAGATAATAATATAAAATTA
TAGGGGGAATTATAATGAAA

Product: putative accessory gene regulator protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESVIIALTAATYRKYSGGMHANT
PNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIYSYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILIL
IEVLLLLFYFKYKNEMLIYYAKCIIAGVLWQSFTLTPLAKRVFANIAME

Sequences:

>Translated_209_residues
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESVIIALTAATYRKYSGGMHANT
PNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIYSYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILIL
IEVLLLLFYFKYKNEMLIYYAKCIIAGVLWQSFTLTPLAKRVFANIAME
>Mature_209_residues
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESVIIALTAATYRKYSGGMHANT
PNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIYSYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILIL
IEVLLLLFYFKYKNEMLIYYAKCIIAGVLWQSFTLTPLAKRVFANIAME

Specific function: May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor (Potential) [H]

COG id: COG4512

COG function: function code OTK; Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AgrB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006741 [H]

Pfam domain/function: PF04647 AgrB [H]

EC number: NA

Molecular weight: Translated: 23594; Mature: 23594

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESV
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIALTAATYRKYSGGMHANTPNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIY
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILILIEVLLLLFYFKYKNEMLIYY
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AKCIIAGVLWQSFTLTPLAKRVFANIAME
HHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFLIEQLSNKIGNKIANNLELDKDTEEIITYGAFSVLQAIWALSCVVILGAICNVLIESV
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIALTAATYRKYSGGMHANTPNKCAILGAIVFVGFALIVKNINIGVNLFLPVICIFTFIY
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SYYAIYKFVPVDTKAKPIENESEILKLRRYSFFIISILILIEVLLLLFYFKYKNEMLIYY
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AKCIIAGVLWQSFTLTPLAKRVFANIAME
HHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]