Click here to switch to the map view.

The map label for this gene is yndE [H]

Identifier: 153935355

GI number: 153935355

Start: 2041636

End: 2042745

Strand: Direct

Name: yndE [H]

Synonym: CLC_1925

Alternate gene names: 153935355

Gene position: 2041636-2042745 (Clockwise)

Preceding gene: 153934686

Following gene: 153936784

Centisome position: 54.29

GC content: 24.59

Gene sequence:

>1110_bases
ATGAACATTAATAGAGATAATGAATTGACAGAAATGCAATTCACTCTAATTTTAATAGGATCCATGATGGGTGTAGGCAT
CTTAAGTCTACCAAATGATGTTATAAAAATCTCAAAGCAAGATGGGTGGATATCTGTTTTATTAGGATCTGTTTACCCTT
TATATATAGTATTTATAGCAAATTATTTAGGCAAAAATTATCCAAAAGAAAATATGCTTATGTTGAGCAAAAAATTTTTT
GGAAAAATGCTAGGAACTATTTTAAATTTAATTTTTATTTTACATTTTATAATTATATCTACAAAAGTAGCATCAGATGT
ATCTAATGTATTGCATATTTATGTGGTCCAATTTTTAGATAAGTGGTCTATGCTAATTGTTATGTATTGTATCATAGCCT
ATGCTATATATGGGGGAACTAAAACTGTAGGAAAGTTAAATGAAATTATATTTTTTTCAACCATTATTATTTTTTTCATA
CCTTTAGTAGCTATAAAGGATGGAAATATCATGAATTTAAAACCATTTTTAGGAAGTGGAGTTTTGAATATAATAAAAGG
GGTAAAAGAAACTGTTTTTTCCTATACTCAAATAGAAATGATCTTATTAATATATCCTTTTTTAAAGGATAGTAACAAAA
TTAAAAAATGTGGATTAAAAAGTATTATTTTTATAACTTTAGTATATTTTCTGTTTACCATAATAGATATACTTTATTTA
GGCATAGGTGCTAGCTTACAATTTATATGGCCAATTGTTACTGTTACTGAAACTATAATGATACCAGTAATAAATTCCTT
TAGATATATATTTATGTCCCTATGGAGTTTAACTATGTTTAAAACTATATGTAATGGTTATTTTATTGCTGTTCATGAAT
TAAGTCAACTAACTAAAAAAATAGATAAAAGAGTAATCCTACTATTAACTATTCCCTTAATGATTATAATATCATCCTTC
TATGGAAATATAACTAATTCAAAAAAAATTTTAGGAAAAATAATGCCTATATATATAATTTACAATATAATTTTTTCCAC
TTCAATCGCCCTATTTGCTTGGAGAGAAAAAAGCAAAAAAGATAAGAAATTACTCCAATCTAATTCATAA

Upstream 100 bases:

>100_bases
CTGAAATAAAAGTTAATGTAAAAGTTAAAGTAGATAGTCAAGGCAGAGGAGACTACTAATTAAAAATATTCTGCTTTATA
GTAAATTAGGAGGATATTTC

Downstream 100 bases:

>100_bases
TAATTTAAATTTATAAGATTATTTATGCTATAAGACCTCTTTTAAAATAGAAATTACATCTGATACTAATTTGGGACAAA
ATGTAGTTAACAATTGTTCT

Product: spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MNINRDNELTEMQFTLILIGSMMGVGILSLPNDVIKISKQDGWISVLLGSVYPLYIVFIANYLGKNYPKENMLMLSKKFF
GKMLGTILNLIFILHFIIISTKVASDVSNVLHIYVVQFLDKWSMLIVMYCIIAYAIYGGTKTVGKLNEIIFFSTIIIFFI
PLVAIKDGNIMNLKPFLGSGVLNIIKGVKETVFSYTQIEMILLIYPFLKDSNKIKKCGLKSIIFITLVYFLFTIIDILYL
GIGASLQFIWPIVTVTETIMIPVINSFRYIFMSLWSLTMFKTICNGYFIAVHELSQLTKKIDKRVILLLTIPLMIIISSF
YGNITNSKKILGKIMPIYIIYNIIFSTSIALFAWREKSKKDKKLLQSNS

Sequences:

>Translated_369_residues
MNINRDNELTEMQFTLILIGSMMGVGILSLPNDVIKISKQDGWISVLLGSVYPLYIVFIANYLGKNYPKENMLMLSKKFF
GKMLGTILNLIFILHFIIISTKVASDVSNVLHIYVVQFLDKWSMLIVMYCIIAYAIYGGTKTVGKLNEIIFFSTIIIFFI
PLVAIKDGNIMNLKPFLGSGVLNIIKGVKETVFSYTQIEMILLIYPFLKDSNKIKKCGLKSIIFITLVYFLFTIIDILYL
GIGASLQFIWPIVTVTETIMIPVINSFRYIFMSLWSLTMFKTICNGYFIAVHELSQLTKKIDKRVILLLTIPLMIIISSF
YGNITNSKKILGKIMPIYIIYNIIFSTSIALFAWREKSKKDKKLLQSNS
>Mature_369_residues
MNINRDNELTEMQFTLILIGSMMGVGILSLPNDVIKISKQDGWISVLLGSVYPLYIVFIANYLGKNYPKENMLMLSKKFF
GKMLGTILNLIFILHFIIISTKVASDVSNVLHIYVVQFLDKWSMLIVMYCIIAYAIYGGTKTVGKLNEIIFFSTIIIFFI
PLVAIKDGNIMNLKPFLGSGVLNIIKGVKETVFSYTQIEMILLIYPFLKDSNKIKKCGLKSIIFITLVYFLFTIIDILYL
GIGASLQFIWPIVTVTETIMIPVINSFRYIFMSLWSLTMFKTICNGYFIAVHELSQLTKKIDKRVILLLTIPLMIIISSF
YGNITNSKKILGKIMPIYIIYNIIFSTSIALFAWREKSKKDKKLLQSNS

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 42113; Mature: 42113

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINRDNELTEMQFTLILIGSMMGVGILSLPNDVIKISKQDGWISVLLGSVYPLYIVFIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHHHHHHHH
NYLGKNYPKENMLMLSKKFFGKMLGTILNLIFILHFIIISTKVASDVSNVLHIYVVQFLD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWSMLIVMYCIIAYAIYGGTKTVGKLNEIIFFSTIIIFFIPLVAIKDGNIMNLKPFLGSG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
VLNIIKGVKETVFSYTQIEMILLIYPFLKDSNKIKKCGLKSIIFITLVYFLFTIIDILYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIGASLQFIWPIVTVTETIMIPVINSFRYIFMSLWSLTMFKTICNGYFIAVHELSQLTKK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IDKRVILLLTIPLMIIISSFYGNITNSKKILGKIMPIYIIYNIIFSTSIALFAWREKSKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
DKKLLQSNS
HHHHHCCCC
>Mature Secondary Structure
MNINRDNELTEMQFTLILIGSMMGVGILSLPNDVIKISKQDGWISVLLGSVYPLYIVFIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHHHHHHHH
NYLGKNYPKENMLMLSKKFFGKMLGTILNLIFILHFIIISTKVASDVSNVLHIYVVQFLD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KWSMLIVMYCIIAYAIYGGTKTVGKLNEIIFFSTIIIFFIPLVAIKDGNIMNLKPFLGSG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCC
VLNIIKGVKETVFSYTQIEMILLIYPFLKDSNKIKKCGLKSIIFITLVYFLFTIIDILYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIGASLQFIWPIVTVTETIMIPVINSFRYIFMSLWSLTMFKTICNGYFIAVHELSQLTKK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IDKRVILLLTIPLMIIISSFYGNITNSKKILGKIMPIYIIYNIIFSTSIALFAWREKSKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
DKKLLQSNS
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]