| Definition | Clostridium botulinum A str. Hall, complete genome. |
|---|---|
| Accession | NC_009698 |
| Length | 3,760,560 |
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The map label for this gene is nrdD [H]
Identifier: 153935349
GI number: 153935349
Start: 115774
End: 117915
Strand: Direct
Name: nrdD [H]
Synonym: CLC_0141
Alternate gene names: 153935349
Gene position: 115774-117915 (Clockwise)
Preceding gene: 153935494
Following gene: 153934804
Centisome position: 3.08
GC content: 29.69
Gene sequence:
>2142_bases ATGCTATATGTTGTGAAAAGAGACGGTAGAAAAGTAGAATTTGATGTTGTTAAAATATCAAATGCTATTAAAGGTGCAGC AGAAGAAATTGCTTTTGATATGAAGGAAAGTGAAAATATAAGTCTAACTCAAAAGGTTATAAAAAAGATAGAAGATTCTA ATAAAGAGGAAATATCAGTAGAAGATATACAAAATTTAGTTGAGCATGTTTTAATTGATAGCGGATTTAAAGAAATAGGG TATGCATATTCAAATTATAGAAGAGAGAGAACAAAAATAAGAGAAATAAAATCTGAATTGATGACAGCTATAGAAAAAAT AGGGGTAGAAACAGATAGAGATAACGCGAATGTAGGTAATAATTTCAGCTCTAAATTATTAAGAATAGCTAGTGAATCTA ACAAATGGTATAATTTAGGGGTTATGCCAAAGCATTTAGCTAAATTACATGAAAATGGAGATATATATTATCATGATTTA GATAGTTACAATTTAACAGTAAATTGTTTAAATATAGATACAGGGCGAATATTACAAAGAGGATTTAATACAGGTTACGG TACAATTAATGCTCCAAAGAGAATTGAAAGTGCTGCAGAGTTAAGTTGTATATTACTTCAATCTACTCAAAATGATATGT TTGGAGGTCAAGCACACGTAAATTTTGATAATGATATGGCTTTATTTATTCCTAATACTAGATCTGAAATAAGAAAAGAA ATATTGGAAAATTTAAAGGGATTAGAGGTACAAGAAGAAGTTTTAAATAAAGAAAAAATTGATGAATTAGTAGAAGAACG ATTAAGACTACGCATACATCAAGCTATGCAAGGAATAGTCTATAATTTAAATACTATGCATTCTAGAGCAGGATCACAAG TACCTTTTAGTTCTATAAATATAGGAATACCTAAAGATAAAGATGCGGCTTTAATATGTGAAATATTTTTAAAAGAGTAT GAAAAAGGATTAGGAAAAGGTGAACAGCCAATATTCCCTAATATAATATTTAGAGTAAAAGAGGGAGTTAATAGAGAAGA GAAGGATCCTTACTACTATTTATTTAAATTAGCTGCTAAAATAGCAGGTAAGAGAATGAACCCTACTTTTATGAATATGG ATTCAGACTTTAACAAAGAATATTATGATAAAGGAATAATACCAGCTACTATGGGATGTAGAACTTATGTATGTTCGAAT ATAAGTGGTGAAGAAGGACCAGCCGGTAGAGGAAATATAGCTCCAACTACTATAAACCTTCCTAGGGTTGGAATATTAGC TAAAAAGGATATAAATAAATTTTTTAATTTACTAGATAATAGATTAGAACTAGCAAGAGAATCTTTATTGCATAGATATA ATGTACTAAAAAAATTAAGAGTTAAAGATTTACCTTTTGTTGTAGGAGAAGGCCTTATGAAGGGTTCAGAAAATTTATTA CCGGATGATTCTATTGAGCCTATTTTAAAACAAGGGTCTTGGGCTATAGGGTTCATAGGTATAGCAGAAACTTTGACAGC CCTTATAGGAAGTCATCACGGGGAAACAGAAGAGGCTAAAGAATTAGGGGTAAAAATAGTTTCTCATATAAGAGATTTCT GTGACAAATATAAAGAAATAGATAAATTAAATTGGAGTTGCTATGCCACACCTGCAGAGGGATTAAGTGGTAAGTTTATT CTTCAAGATAAAAAAGTTTTTGGAGAAATAAAAGGTGTTACAGATAAGAACTACTATACTAATAGTTATCATATACCAGT AGGTTTCCCAATATCAATTAAGGAAAAGATAAATATAGAGGCTCCTTATCATAAAATATGTAATGGCGGACATATAAGTT ATATCGAGTTAGATGATTATCCATCAGAAGAGGTAATTATGGATATAATCCAATATGCATATAGAAATACTAACATATCT TATATGGGGATAAATTTCCATATAAAATATTGTAGAGAATGTGGAACATATCTTGGAGTAGAGGAAGAAGCTTGTAATAA TTGTGGAAGTACAAATATACAAGGCATATCTAGAGTAACAGGATATTTAAGCTTAGATGAGAGATTTGGTTCTGGTAAAG TAGCAGAAAGAGCTGATAGGACATCAAATAATTCTAGTCATAGAAAAATTTATAATGCATAA
Upstream 100 bases:
>100_bases CGGTATATTTATTTAAATATAAAATTGCTGAAAAAAATTTAAGATAGTATAATGTTCAAAGTACATATACACAATATGTT GTAGGTAGGAGGAATATAGT
Downstream 100 bases:
>100_bases ATTGAGGTGTTTGGCTATGGAGAATAAATATTTACAAGTAGCAGGCTTTTTAGATAATTCCTTAGTTAATGGATTAGGAC TAAGGTCAGTAGTATTTGTA
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISVEDIQNLVEHVLIDSGFKEIG YAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGNNFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDL DSYNLTVNCLNIDTGRILQRGFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPKDKDAALICEIFLKEY EKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAKIAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSN ISGEEGPAGRGNIAPTTINLPRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEIDKLNWSCYATPAEGLSGKFI LQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIEAPYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNIS YMGINFHIKYCRECGTYLGVEEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA
Sequences:
>Translated_713_residues MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISVEDIQNLVEHVLIDSGFKEIG YAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGNNFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDL DSYNLTVNCLNIDTGRILQRGFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPKDKDAALICEIFLKEY EKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAKIAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSN ISGEEGPAGRGNIAPTTINLPRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEIDKLNWSCYATPAEGLSGKFI LQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIEAPYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNIS YMGINFHIKYCRECGTYLGVEEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA >Mature_713_residues MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISVEDIQNLVEHVLIDSGFKEIG YAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGNNFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDL DSYNLTVNCLNIDTGRILQRGFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPKDKDAALICEIFLKEY EKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAKIAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSN ISGEEGPAGRGNIAPTTINLPRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEIDKLNWSCYATPAEGLSGKFI LQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIEAPYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNIS YMGINFHIKYCRECGTYLGVEEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=728, Percent_Identity=31.5934065934066, Blast_Score=327, Evalue=2e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 80756; Mature: 80756
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV CEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEH EDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDLDSYNLTVNCLNIDTGRILQR CHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCEEEEEEEECCHHHHHHH GFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE CCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHH ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSIN HHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE IGIPKDKDAALICEIFLKEYEKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAK ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH IAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSNISGEEGPAGRGNIAPTTINL HHCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECC PRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEI CCCCHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DKLNWSCYATPAEGLSGKFILQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIE HCCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCCCCEECCEEEEECCCCEEECCCEECC APYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNISYMGINFHIKYCRECGTYLGV CCHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCC EEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA CHHHHCCCCCCCCCHHHHHHHHEEEHHHCCCCCHHHHHHCCCCCCCCCEECCC >Mature Secondary Structure MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV CEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEH EDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDLDSYNLTVNCLNIDTGRILQR CHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCEEEEEEEECCHHHHHHH GFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE CCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHH ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSIN HHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE IGIPKDKDAALICEIFLKEYEKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAK ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH IAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSNISGEEGPAGRGNIAPTTINL HHCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECC PRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEI CCCCHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DKLNWSCYATPAEGLSGKFILQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIE HCCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCCCCEECCEEEEECCCCEEECCCEECC APYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNISYMGINFHIKYCRECGTYLGV CCHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCC EEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA CHHHHCCCCCCCCCHHHHHHHHEEEHHHCCCCCHHHHHHCCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]