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The map label for this gene is rbfA

Identifier: 153935306

GI number: 153935306

Start: 2392467

End: 2392829

Strand: Reverse

Name: rbfA

Synonym: CLC_2264

Alternate gene names: 153935306

Gene position: 2392829-2392467 (Counterclockwise)

Preceding gene: 153936032

Following gene: 153934519

Centisome position: 63.63

GC content: 28.65

Gene sequence:

>363_bases
ATGGCAAAATATAGAGCAGGAAGAATAAATGAAGAAGTAAAAAAAGAAGTGAGTAATATTATTCATAATGATATAAAAGA
TCCAAGACTGAGTGCCATGGTGAGTGTAACAGATGTAAATGTTACAAAAGATTTGAAATATGCAAAGGTATATGTAAGTA
TTTTTGGAAATGAAAAAGCAAAAGAAGAATCTCTAGAGGCATTAAAAAGTTCTGTAGGTTTCATAAGAAAAGAAGTTGGA
AGAAGAGTTAAATTAAGAAATACACCAGAGGTTATAATAGAAGTAGATAATAGTATTGAAAGAGGTATGCATATAGATGA
ACTTCTTCATTCAATAAAGGAGAATGAGTCAAATGATAACTAA

Upstream 100 bases:

>100_bases
TAATGATATAAAAGAAGGCGACATAATTGAATGCTTTATCATGGAAGAGATTAAAAAGAAAACACTATAAAGTTCTCTTC
TAAAAAAAGGAGTGGTTTTC

Downstream 100 bases:

>100_bases
TGATATACTAGATAAAATAAAGGAAAGTAATAGTGTAGCTATTACTTTCCATACTTCTCCTGATGGGGATTCCTTAGGAA
GCGCTTTAGGATTACTTCAG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MAKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVNVTKDLKYAKVYVSIFGNEKAKEESLEALKSSVGFIRKEVG
RRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN

Sequences:

>Translated_120_residues
MAKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVNVTKDLKYAKVYVSIFGNEKAKEESLEALKSSVGFIRKEVG
RRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN
>Mature_119_residues
AKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVNVTKDLKYAKVYVSIFGNEKAKEESLEALKSSVGFIRKEVGR
RVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=110, Percent_Identity=39.0909090909091, Blast_Score=90, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CLOB1 (A7FVZ2)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384592.1
- ProteinModelPortal:   A7FVZ2
- SMR:   A7FVZ2
- STRING:   A7FVZ2
- GeneID:   5397108
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_2281
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   CBOT441770:CLB_2281-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13683; Mature: 13552

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVNVTKDLKYAKVYVSIFGNEKA
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCH
KEESLEALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN
HHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKYRAGRINEEVKKEVSNIIHNDIKDPRLSAMVSVTDVNVTKDLKYAKVYVSIFGNEKA
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCH
KEESLEALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHSIKENESNDN
HHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECCHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA