Click here to switch to the map view.

The map label for this gene is udgA

Identifier: 153935117

GI number: 153935117

Start: 96766

End: 97338

Strand: Direct

Name: udgA

Synonym: CLC_0121

Alternate gene names: NA

Gene position: 96766-97338 (Clockwise)

Preceding gene: 153934572

Following gene: 153936342

Centisome position: 2.57

GC content: 30.72

Gene sequence:

>573_bases
GTGCTAAAGTGGTCTCAATTATATGATGAATGTATTAATTGTAATAAATGTACTTTAGTTAAAAATAGAACTAATATGGT
ATTTGGAGAAGGCAATATAAGTGCACCTATTATGTTTATAGGGGAAGCTCCAGGAGCAGATGAGGATAGGACAGGAAGAC
CTTTTGTGGGGAAAGCCGGACAGTTACTTACTAAAGCATTATTAGCATTAGATTTTAAAAGAGATGAACATTATTATATA
TGTAATGTGTGCAAATGTAGGCCAGAAAATAATAGAACTCCTAAAGAAGAAGAAGCTATGACTTGCTTACCTTATTTAAG
AAATCAAGTGGCATTGGTAAAACCTAAAATTATGATTTGCTTAGGAGCTACTGCTTTAAAATATATTATGGGAGAACAAT
TTAGAATAACAAGAGATAGAGGTAAATGGATAGAAAGAAAAGGATATTATATTATGGCAACTTTTCATCCGGCGGCTTTA
TTTAGAGATGAGTCTAAGAAAAAATTATTGTGGCAAGACTTAAAATCTATTAGGGAAAAATATGATGAGTTAATTAAAAA
TAATATAGTTTAG

Upstream 100 bases:

>100_bases
TATAGCATTAAATAAAGCAATATAGTTAATAAAGATATGTTTATATGGTAAAATTAAACTAGATATTTGGATATAATGTA
TAGAAATAGAGGTGGAAAAA

Downstream 100 bases:

>100_bases
AGTTAATATAAAGTGAAAGAGGATACAAATGGATAATATGGAATTATCAAAAGAACTTATAAAATTTATAATTACTATGA
AAAAACAAATTAAGAAATAT

Product: uracil-DNA glycosylase

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase Family 4 Protein; DNA Polymerase-Related Protein; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; DNA Glycosylase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil DNA Glycosylase; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; Phage DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; N-Terminus Of Phage SPO1 DNA Polymerase; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAGQLLTKALLALDFKRDEHYYI
CNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMICLGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAAL
FRDESKKKLLWQDLKSIREKYDELIKNNIV

Sequences:

>Translated_190_residues
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAGQLLTKALLALDFKRDEHYYI
CNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMICLGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAAL
FRDESKKKLLWQDLKSIREKYDELIKNNIV
>Mature_190_residues
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAGQLLTKALLALDFKRDEHYYI
CNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMICLGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAAL
FRDESKKKLLWQDLKSIREKYDELIKNNIV

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 22037; Mature: 22037

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAG
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHH
QLLTKALLALDFKRDEHYYICNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMIC
HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCEEEEE
LGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAALFRDESKKKLLWQDLKSIREK
ECHHHHHHHHCCCEEEECCCCCEEECCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHH
YDELIKNNIV
HHHHHHHCCC
>Mature Secondary Structure
MLKWSQLYDECINCNKCTLVKNRTNMVFGEGNISAPIMFIGEAPGADEDRTGRPFVGKAG
CCCHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHH
QLLTKALLALDFKRDEHYYICNVCKCRPENNRTPKEEEAMTCLPYLRNQVALVKPKIMIC
HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCEEEEE
LGATALKYIMGEQFRITRDRGKWIERKGYYIMATFHPAALFRDESKKKLLWQDLKSIREK
ECHHHHHHHHCCCEEEECCCCCEEECCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHH
YDELIKNNIV
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA