Click here to switch to the map view.

The map label for this gene is atpC

Identifier: 153934961

GI number: 153934961

Start: 184484

End: 184885

Strand: Direct

Name: atpC

Synonym: CLC_0205

Alternate gene names: 153934961

Gene position: 184484-184885 (Clockwise)

Preceding gene: 153935797

Following gene: 153935794

Centisome position: 4.91

GC content: 27.36

Gene sequence:

>402_bases
ATGAAAGATAATATAGAACTTACTATATTTACTCCTGAAAAAAATATTAAAATTGGAGAGATAAAAGAAGTAATAACTGA
AGGGTTAGATGGAGATTTAGCTATACTTCCTAATCATGTCAATATGATTACTTATTTAAAGCCAACTATTACAAAATATA
TAGATTTAAATGGCAATAAAAACAATATATTTACATCTAGTGGGGTATTAAAAGTAGAAGATAATAAGGTTTATATTATC
TGTGATGCTAGTGAAAAGCCAGAAGATATAGATATAAAGAGAGCAGAGAACGCTAGAAAAAGAGCGGAGGAAAGATTGCG
AAATAAAAAAGAGATAGATGTAAAAAGAGCAGAATTGGCATTGTTTAGATCTATTGCTAGAATTAAAATTAAAGAACTTT
AG

Upstream 100 bases:

>100_bases
TATTCCAGAATCAGCTTTTTTATTCCAAGGAACTATAGAAGATGTTTTAAAGAAAGCACAACAAATGGAAATATAATTAG
GTTAATAAGAGGAGAATAAT

Downstream 100 bases:

>100_bases
AGAAAGTTTTATAGCTTACAAGGTATACATAACTTTAACATTAAAAATGTTATGTATACCTTGTAAGCTTTTTTGTAAGT
ATTTTAAAAACAATTCACAT

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKDNIELTIFTPEKNIKIGEIKEVITEGLDGDLAILPNHVNMITYLKPTITKYIDLNGNKNNIFTSSGVLKVEDNKVYII
CDASEKPEDIDIKRAENARKRAEERLRNKKEIDVKRAELALFRSIARIKIKEL

Sequences:

>Translated_133_residues
MKDNIELTIFTPEKNIKIGEIKEVITEGLDGDLAILPNHVNMITYLKPTITKYIDLNGNKNNIFTSSGVLKVEDNKVYII
CDASEKPEDIDIKRAENARKRAEERLRNKKEIDVKRAELALFRSIARIKIKEL
>Mature_133_residues
MKDNIELTIFTPEKNIKIGEIKEVITEGLDGDLAILPNHVNMITYLKPTITKYIDLNGNKNNIFTSSGVLKVEDNKVYII
CDASEKPEDIDIKRAENARKRAEERLRNKKEIDVKRAELALFRSIARIKIKEL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

Organism=Escherichia coli, GI1790169, Length=134, Percent_Identity=26.865671641791, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_CLOB1 (A7FQI0)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001382564.1
- ProteinModelPortal:   A7FQI0
- SMR:   A7FQI0
- STRING:   A7FQI0
- GeneID:   5395006
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_0193
- eggNOG:   COG0355
- HOGENOM:   HBG663981
- OMA:   ARAELME
- ProtClustDB:   PRK13450
- BioCyc:   CBOT441770:CLB_0193-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020547
- InterPro:   IPR020546
- Gene3D:   G3DSA:1.20.5.440
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF00401 ATP-synt_DE; PF02823 ATP-synt_DE_N; SSF46604 ATPsynt_DE; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 15267; Mature: 15267

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNIELTIFTPEKNIKIGEIKEVITEGLDGDLAILPNHVNMITYLKPTITKYIDLNGNK
CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCC
NNIFTSSGVLKVEDNKVYIICDASEKPEDIDIKRAENARKRAEERLRNKKEIDVKRAELA
CCEEECCCEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
LFRSIARIKIKEL
HHHHHHHEEEECC
>Mature Secondary Structure
MKDNIELTIFTPEKNIKIGEIKEVITEGLDGDLAILPNHVNMITYLKPTITKYIDLNGNK
CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCC
NNIFTSSGVLKVEDNKVYIICDASEKPEDIDIKRAENARKRAEERLRNKKEIDVKRAELA
CCEEECCCEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
LFRSIARIKIKEL
HHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA