Click here to switch to the map view.

The map label for this gene is pduA [H]

Identifier: 153934753

GI number: 153934753

Start: 2188456

End: 2188764

Strand: Reverse

Name: pduA [H]

Synonym: CLC_2062

Alternate gene names: 153934753

Gene position: 2188764-2188456 (Counterclockwise)

Preceding gene: 153934555

Following gene: 153937642

Centisome position: 58.2

GC content: 35.92

Gene sequence:

>309_bases
ATGGCAAGATATGAAGCTTTAGGATTAATCGAAACTTTTGGTCTGGTTTTTGCTTTAGAAGCAGCAGACGCTATGTGCAA
ATCAGCAGATGTTGAACTTATAGGATATGAAAATGTTGCATCAGGTTATATATCTGTATTAGTTCGTGGTGATGTTGGTG
CTTGTAAAACAGCAGTAGATGCTGGTGTTGCAGCAGTTAATGGAATGGAAGGTGGAAACCTATATAGCTCAATAGTTATT
CCAAGACCACACGAAGATCTTGAAAAAATAATAAAACGTTATGCCATTACAGATATTATAACAGAATAG

Upstream 100 bases:

>100_bases
TAACAGCACACAATGTTATGCCACGTCCTATTAGAGAAGTTGGAGATATTGTTTCAGTACACGATATCGATTCATAAAAT
AGAAAGGAAATGATATACAT

Downstream 100 bases:

>100_bases
AAAAATGAATTTTTTCTAAAGAAAAGGAGAGAGAAAGATGAATATTATAGATAATGATTTACTCTCCATGCAGGAAGCTA
GAATTCTTGTTGAAAATGCC

Product: microcompartments family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MARYEALGLIETFGLVFALEAADAMCKSADVELIGYENVASGYISVLVRGDVGACKTAVDAGVAAVNGMEGGNLYSSIVI
PRPHEDLEKIIKRYAITDIITE

Sequences:

>Translated_102_residues
MARYEALGLIETFGLVFALEAADAMCKSADVELIGYENVASGYISVLVRGDVGACKTAVDAGVAAVNGMEGGNLYSSIVI
PRPHEDLEKIIKRYAITDIITE
>Mature_101_residues
ARYEALGLIETFGLVFALEAADAMCKSADVELIGYENVASGYISVLVRGDVGACKTAVDAGVAAVNGMEGGNLYSSIVIP
RPHEDLEKIIKRYAITDIITE

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=87, Percent_Identity=54.0229885057471, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 10826; Mature: 10694

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYEALGLIETFGLVFALEAADAMCKSADVELIGYENVASGYISVLVRGDVGACKTAVD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCEEEEEEECCCCHHHHHHH
AGVAAVNGMEGGNLYSSIVIPRPHEDLEKIIKRYAITDIITE
HHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARYEALGLIETFGLVFALEAADAMCKSADVELIGYENVASGYISVLVRGDVGACKTAVD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCEEEEEEECCCCHHHHHHH
AGVAAVNGMEGGNLYSSIVIPRPHEDLEKIIKRYAITDIITE
HHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]