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The map label for this gene is yhcF [H]

Identifier: 153934632

GI number: 153934632

Start: 631273

End: 631653

Strand: Direct

Name: yhcF [H]

Synonym: CLC_0615

Alternate gene names: 153934632

Gene position: 631273-631653 (Clockwise)

Preceding gene: 153937319

Following gene: 153934936

Centisome position: 16.79

GC content: 27.82

Gene sequence:

>381_bases
TTGAAAATTAAATTTGATGACAAAATAGCAATATATATTCAGATAATGAATTATGTAAAACAAAATATAGTCAATGGTAG
CTTTCAGTTAGGAGATAAACTTCCATCTGTTAGAGAATTCTCTAAGGAGCTTACCGTTAATCCAAATACATTACAAAGAG
CTTATCAGGAATTAGAACGAGAAGGTATAATTTTTACCCAACGAGGAATGGGGTCCTTTATTAGTAAAGATAAAAAAATA
ATAGAAAGGGTAAAAGAGGAAATGAGTAGGGAAATAGTACAAAATTTTTTAGAGGGAATGAAGAAAATAGGCTTTAAAAA
AGAAGAAATATTAAATTTAGTAAGAAAGGAATTAGAAAGGGAGGATATAAATAATGGATAA

Upstream 100 bases:

>100_bases
AAAAATCATTATTTTTAAAATAAAGTTTATATTGATATTGACAATACTATAACACTAGTGTACTATTTAGATAGTACAGT
AGAACTTTGGAGGTGAAGTT

Downstream 100 bases:

>100_bases
GATATTAACTTGTTCTAATTTAAAGAAAGGTTATTTTAATAAAAATGCATTAAATGGACTTGCAATGGAAGTAAAAAAGG
GAAAAATAGTAGGATTATTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKIKFDDKIAIYIQIMNYVKQNIVNGSFQLGDKLPSVREFSKELTVNPNTLQRAYQELEREGIIFTQRGMGSFISKDKKI
IERVKEEMSREIVQNFLEGMKKIGFKKEEILNLVRKELEREDINNG

Sequences:

>Translated_126_residues
MKIKFDDKIAIYIQIMNYVKQNIVNGSFQLGDKLPSVREFSKELTVNPNTLQRAYQELEREGIIFTQRGMGSFISKDKKI
IERVKEEMSREIVQNFLEGMKKIGFKKEEILNLVRKELEREDINNG
>Mature_126_residues
MKIKFDDKIAIYIQIMNYVKQNIVNGSFQLGDKLPSVREFSKELTVNPNTLQRAYQELEREGIIFTQRGMGSFISKDKKI
IERVKEEMSREIVQNFLEGMKKIGFKKEEILNLVRKELEREDINNG

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14831; Mature: 14831

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKFDDKIAIYIQIMNYVKQNIVNGSFQLGDKLPSVREFSKELTVNPNTLQRAYQELER
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
EGIIFTQRGMGSFISKDKKIIERVKEEMSREIVQNFLEGMKKIGFKKEEILNLVRKELER
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EDINNG
HCCCCC
>Mature Secondary Structure
MKIKFDDKIAIYIQIMNYVKQNIVNGSFQLGDKLPSVREFSKELTVNPNTLQRAYQELER
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH
EGIIFTQRGMGSFISKDKKIIERVKEEMSREIVQNFLEGMKKIGFKKEEILNLVRKELER
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EDINNG
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]