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The map label for this gene is ydcI [H]

Identifier: 153934599

GI number: 153934599

Start: 205499

End: 207655

Strand: Direct

Name: ydcI [H]

Synonym: CLC_0230

Alternate gene names: 153934599

Gene position: 205499-207655 (Clockwise)

Preceding gene: 153936079

Following gene: 153937095

Centisome position: 5.46

GC content: 29.76

Gene sequence:

>2157_bases
ATGAACAATATAAACAGTATTTTATCAAAAGAACTTAACATATCCATTAAATATATAGATGCAGTTATAGATTTATTAGA
TCAGGGAAATACAGTACCTTTTATAGCAAGATATAGAAAAGAAGTAACAGGAGGTATGAGTGACGAAACGCTTAGAGAGC
TCTTTGAAAGGCTTACATATTTAAGAAATTTAAGTTCCAAGAAAGAGGATGTTATAAGACTCATAGAGGAGCAAGGCAAA
CTTACAGAAGAGCTTAAAACATCTATAATTAATTGTAAAACTGTTACAGAAGTAGAGGATTTATATAGACCTTATAGACC
AAAAAGAAGGACAAGAGCTACTATAGCAGAAGAAAAAGGATTAAAGCCTTTAGCAGAAATAATATTAGAAGGTAATTTTA
AAGAAGATATAAAAGTATATGCTAGTGAATTCATAAATGAAGAAAAAGAAGTAAAGACTATTGAAGAAGCTCTTCAGGGT
GCTATGGATATAATAAGCGAAGTTATATCTGATGAAGCAGAATACAGAAAATGGATAAGAAATTTTGTTTTTAATGAAGG
AGTAATAGAAACTAAAGGTGAAAGCATGGAACCTACTCCTTACGAAATGTATTATGATTATAAAGAAAATGTAAAAAATA
TTCCTCCTCATCGAATACTAGCTATAAATAGAGGAGAAAAAGAAAAAATATTAACAGCAAAAGTTACTTGTAATGAAGAT
AAAATAATAGATTATTTAAAAAGTAGATCATTAAAAGGAAATAAGGAAACGGATGTATATATAGAGGAGTCTGTTAAAGA
TTCTTTAAAAAGATTAATATATCCATCCATAGAAAGAGAGATAAGATCAGAGTTAACAGAAAAAGGTGAAGAAGGAGCAA
TAAAAATATTTAAAGAGAATTTAAAGGCCCTTTTGATGCAAGCACCTATAAAGGATAAAGTAGTTTTAGGATATGACCCA
GGGTTTAGAACAGGATGTAAGATAGCAGTATTAGATGAAACAGGAAAATTATTAGATACAGCTACGGTTTATGCTACAGC
ACCACAAAATGATGTAGAAGGGTCTATAAAAGTATTAAAAAAATTAATATACAAATATGATGTTGATGTAATATCTTTAG
GAAATGGAACAGCTAGTAGAGAATCAGAAGAGGTTATATCAAAAATGCTTAAAGAAATAAAAGAAGAAAAAGGCAAAGAT
ATATATTATGTTATAGTATCTGAAGCAGGAGCCTCTGTTTATTCTGCGTCAAAATTAGCTACAGAAGAATATCCAGATAT
AAATGTTTCTTTAAGAGGGGCTATATCTATATGTAGAAGACTTCAAGATCCTCTAGCAGAACTTGTAAAAATAGATCCTA
AGTCTATAGGGGTAGGACAATATCAACACGATGTATCTCAAAAAAAATTAGATGAATCATTAAAAGGTGTGGTAGAAGAT
TGTGTTAATGCGGTAGGAGTAGATTTAAATACTGCAACACCATCACTTTTATCTTATATTTCAGGCATTAATAGCTCTAT
AGCTAAAAATATAGTAGCTTATAGAGAGGAAATAGGGAAATTTAAAAATAGAAAAGAATTATTAAAAGTAAAAAGGTTAG
GACAAAAAGCCTTTGAGCAATGTGCAGGTTTTCTTAGAGTTATGGAAAGTAAAGAACCTTTAGATAATACAGGAGTCCAT
CCAGAGTCCTATGAGGGAACCAAGAAATTTTTAAGCTTGTTACAATATGATATAAAAGATGTAAAAAATAATAAATTACA
GGATATAGATGATAGGGTTAATAATATAGGACTAGATGATATATGTAATAAAATAGATATAGGGAAACCTACACTATTAG
ATATTATAAAAGAAATAAAAAAACCAGGAAGAGATCCAAGAGAAGATTTACCTAAACCTATATTAAAGACAGGGATTGTT
GATATAACTCAATTAAAGCCAGACATGGTTCTAATGGGTACCGTTAGGAATGTAGCTGATTTTGGAGCCTTTGTAGACAT
AGGAGTTCATCAAGATGGCTTAGTACATATAAGTCAACTTTCAGATAGGTTTGTAAAACATCCCTTAGATATAGTAAAAG
TGGGAGATATAGTGGAAGTTAGAATATTGGAGGTAGATAAAAAGAGAAACAGAATTTCTTTAAGCATGAAAAAATAA

Upstream 100 bases:

>100_bases
CCTATAAATTGTTTATAATTTAATTTATATTAATTTGCCAAAGGATATATAACTGGTATAATATATTTTTAGTGACTTTA
TTTAATATTTGGAGGTAAAG

Downstream 100 bases:

>100_bases
ATCATTGGATAAATATTAATATTGAATTTAAATTATTAATAGTATATAATAAAAATGCATAAAATTAATATTAATATCTT
CAGGGCGGGGTGTAATTCCC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKKLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISICRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK

Sequences:

>Translated_718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKKLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISICRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK
>Mature_718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKKLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISICRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=783, Percent_Identity=34.7381864623244, Blast_Score=423, Evalue=1e-118,
Organism=Homo sapiens, GI27597090, Length=764, Percent_Identity=21.5968586387435, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI87082262, Length=729, Percent_Identity=45.5418381344307, Blast_Score=623, Evalue=1e-179,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI145693187, Length=69, Percent_Identity=47.8260869565217, Blast_Score=63, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=750, Percent_Identity=32.4, Blast_Score=317, Evalue=1e-86,
Organism=Caenorhabditis elegans, GI17552892, Length=264, Percent_Identity=27.6515151515151, Blast_Score=80, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6321552, Length=428, Percent_Identity=23.8317757009346, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI62484314, Length=768, Percent_Identity=32.9427083333333, Blast_Score=395, Evalue=1e-110,
Organism=Drosophila melanogaster, GI24640080, Length=706, Percent_Identity=22.9461756373938, Blast_Score=104, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81269; Mature: 81269

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRNLSSKKEDVIRLIEEQGKLTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKG
HHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQGAMDIISEVISDEAEYRKWIR
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
HHHHCCCCEECCCCCCCCCCHHEEECHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCHH
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKEN
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
LKALLMQAPIKDKVVLGYDPGFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHEEEEECCCCCCCHHHHHHH
KLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKDIYYVIVSEAGASVYSASKLA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHH
TEEYPDINVSLRGAISICRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQ
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEPLDNTGVHPESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH
ICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVAD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHCCCCEEEHHHHHHHHH
FGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK
HCCCEEECCCCCCCHHHHHHHHHHHHCCHHHEECCCEEEEEEEEECCCCCCEEEEECC
>Mature Secondary Structure
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRNLSSKKEDVIRLIEEQGKLTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKG
HHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQGAMDIISEVISDEAEYRKWIR
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
HHHHCCCCEECCCCCCCCCCHHEEECHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCHH
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKEN
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
LKALLMQAPIKDKVVLGYDPGFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHEEEEECCCCCCCHHHHHHH
KLIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKDIYYVIVSEAGASVYSASKLA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHH
TEEYPDINVSLRGAISICRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQ
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEPLDNTGVHPESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH
ICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVAD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHCCCCEEEHHHHHHHHH
FGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK
HCCCEEECCCCCCCHHHHHHHHHHHHCCHHHEECCCEEEEEEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]